Mercurial > repos > kevyin > homer

changeset 14:64d206abd8bc draft

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Deleted selected files
author kevyin
date Wed, 07 Nov 2012 01:04:02 -0500
parents 106c7c3720aa
children c213c46b12cf
files bed2pos.xml pos2bed.xml
diffstat 2 files changed, 0 insertions(+), 68 deletions(-) [+]
line wrap: on
line diff
--- a/bed2pos.xml	Wed Nov 07 01:03:51 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,34 +0,0 @@
-<tool id="homer_bed2pos" name="homer_bed2pos" version="0.0.1">
-    <requirements>
-        <requirement type="package">homer</requirement>
-    </requirements>
-    <description></description>
-    <!--<version_command></version_command>-->
-    <command>
-        bed2pos.pl $input_bed 1&gt; $out_pos
-        2&gt; $out_log || echo "Error running bed2pos." >&amp;2
-    </command>
-    <inputs>
-        <param format="tabular,bed" name="input_bed" type="data" label="BED file" />
-    </inputs>
-    <outputs>
-        <!--<data format="html" name="html_outfile" label="index" />-->
-        <!--<data format="html" hidden="True" name="html_outfile" label="index.html" />-->
-        <data format="tabular" name="out_pos" label="${tool.name} on #echo os.path.splitext(str($input_bed.name))[0]#" />
-        <data format="txt" name="out_log" label="${tool.name} on #echo os.path.splitext(str($input_bed.name))[0]#.log" />
-    </outputs>
-    <tests>
-        <test>
-            <!--<param name="input_file" value="extract_genomic_dna.fa" />-->
-            <!--<output name="html_file" file="sample_output.html" ftype="html" />-->
-        </test>
-    </tests>
-
-    <help>
-        .. class:: infomark
-
-        **Homer bed2pos.pl**
-        http://biowhat.ucsd.edu/homer/ngs/miscellaneous.html
-    </help>
-</tool>
-
--- a/pos2bed.xml	Wed Nov 07 01:03:51 2012 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,34 +0,0 @@
-<tool id="homer_pos2bed" name="homer_pos2bed" version="0.0.1">
-    <requirements>
-        <requirement type="package">homer</requirement>
-    </requirements>
-    <description></description>
-    <!--<version_command></version_command>-->
-    <command>
-        pos2bed.pl $input_peak 1&gt; $out_bed
-        2&gt; $out_log || echo "Error running pos2bed." >&amp;2
-    </command>
-    <inputs>
-        <param format="tabular" name="input_peak" type="data" label="Homer peak positions" />
-    </inputs>
-    <outputs>
-        <!--<data format="html" name="html_outfile" label="index" />-->
-        <!--<data format="html" hidden="True" name="html_outfile" label="index.html" />-->
-        <data format="bed" name="out_annotated" label="${tool.name} on #echo os.path.splitext(str($input_peak.name))[0]#.bed" />
-        <data format="txt" name="out_log" label="${tool.name} on #echo os.path.splitext(str($input_peak.name))[0]#.log" />
-    </outputs>
-    <tests>
-        <test>
-            <!--<param name="input_file" value="extract_genomic_dna.fa" />-->
-            <!--<output name="html_file" file="sample_output.html" ftype="html" />-->
-        </test>
-    </tests>
-
-    <help>
-        .. class:: infomark
-
-        **Homer pos2bed.pl**
-        http://biowhat.ucsd.edu/homer/ngs/miscellaneous.html
-    </help>
-</tool>
-