diff README @ 15:9b6eee0346de

Uploaded

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+++ b/README	Thu Sep 13 22:01:55 2012 -0400
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+Copyright (c) 2012, Kenneth Sabir
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+
+        Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+        Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the 
+            documentation and/or other materials provided with the distribution.
+        Neither the name of the Garvan Institute nor the names of its contributors may be used to endorse or promote products derived from this 
+            software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, 
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS 
+BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE 
+GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT 
+LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF 
+SUCH DAMAGE.
+
+##################################################
+Installation:
+#================================================#
+
+Set the number of threads to use edit fastq_groomer_parallel.xml:
+Modify the last argument in the <command> tag, Default is 2
+
+
+Tested on -r e6444e7a1685
+This currently depends on the following galaxy_utils python library which should come with the default galaxy install
+
+More info:
+    from galaxy_utils.sequence.fastq import fastqReader, fastqVerboseErrorReader, fastqAggregator, fastqWriter
+##################################################