Mercurial > repos > jpetteng > ectyper2

changeset 4:cb589bba25ba draft

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Uploaded
author jpetteng
date Tue, 09 Jan 2018 13:24:25 -0500
parents 59cc76a2b3e0
children da19205904ae
files ecoli_serotyping/ectyper.xml
diffstat 1 files changed, 1 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/ecoli_serotyping/ectyper.xml	Tue Jan 09 13:20:23 2018 -0500
+++ b/ecoli_serotyping/ectyper.xml	Tue Jan 09 13:24:25 2018 -0500
@@ -1,15 +1,6 @@
 <tool id="ectyper" name="ectyper" version="2.0">
     <requirements>
-      <requirement type="package" version="3.5">python</requirement>
-      <requirement type="package">biopython</requirement>
-      <requirement type="package">blast</requirement>
-      <requirement type="package">samtools</requirement>
-      <requirement type="package">bcftools</requirement>
-      <requirement type="package">bowtie</requirement>
-      <requirement type="package">spades</requirement>
-      <requirement type="package">seqtk</requirement>
-      <requirement type="package">pandas</requirement>
-      <requirement type="package">mash</requirement>
+      <requirement type="package">ectyper</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
       #if $jobtype.select == "asm"