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changeset 23:8ff260813c5e

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Uploaded
author jorrit
date Tue, 26 Feb 2013 20:21:57 -0500
parents 543851630f66
children b2d80f3ec292
files ontologizer.xml tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/ontologizer.xml	Tue Feb 26 19:06:21 2013 -0500
+++ b/ontologizer.xml	Tue Feb 26 20:21:57 2013 -0500
@@ -1,8 +1,7 @@
-<tool id="ontologizer" name="ontologizer" version="0.0.14">
+<tool id="ontologizer" name="ontologizer" version="0.0.15">
   <description>from http://compbio.charite.de/contao/</description>
   <requirements>
-    <requirement type="set_environment">ONTOLOGIZER_JAR_PATH</requirement>
-    <requirement type="package" version="0.0.1">ontologizer-jar</requirement>
+    <requirement type="package" version="0.0.2">ontologizer-jar</requirement>
   </requirements>
   <command>java -Xmx2G -jar $ONTOLOGIZER_JAR --go $go --association $gaf --population $pop --studyset $study --dot 0.05 > $output</command>
   <inputs>
--- a/tool_dependencies.xml	Tue Feb 26 19:06:21 2013 -0500
+++ b/tool_dependencies.xml	Tue Feb 26 20:21:57 2013 -0500
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="ontologizer-jar" version="0.0.1">
+    <package name="ontologizer-jar" version="0.0.2">
         <install version="1.0">
             <actions>
                 <action type="shell_command">curl --silent --show-error --output $INSTALL_DIR/ontologizer.jar http://compbio.charite.de/contao/index.php/cmdlineOntologizer.html?file=tl_files/ontologizer/cmdline/Ontologizer.jar</action>