Mercurial > repos > jorrit > obotools
changeset 36:2ab168fd30a6
Uploaded
| author | jorrit |
|---|---|
| date | Tue, 26 Feb 2013 23:25:57 -0500 |
| parents | 25c037153c9f |
| children | 2633a06624e4 |
| files | ontologizer.xml |
| diffstat | 1 files changed, 1 insertions(+), 2 deletions(-) [+] |
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--- a/ontologizer.xml Tue Feb 26 23:08:53 2013 -0500 +++ b/ontologizer.xml Tue Feb 26 23:25:57 2013 -0500 @@ -1,10 +1,9 @@ <tool id="ontologizer" name="ontologizer" version="0.0.16"> <description>from http://compbio.charite.de/contao/</description> <requirements> - <requirement type="set_environment">ONTOLOGIZER_JAR</requirement> <requirement type="package" version="0.0.3">ontologizer-jar</requirement> </requirements> - <command>java -Xmx2G -jar \$ONTOLOGIZER_JAR --go $go --association $gaf --population $population --studyset $studyset --dot 0.05 --mtc "$mtc" --calculation "$calc"; mv table-*.txt $tablefile; mv view-*.dot $dotfile</command> + <command>java -Xmx2G -jar \$ONTOLOGIZER_JAR --go $go --association $gaf --population $population --studyset $studyset --dot 0.05 --mtc "$mtc" --calculation "$calc"; echo moving files; mv table-*.txt $tablefile; mv view-*.dot $dotfile; echo moving files to $dotfile</command> <inputs> <param name="go" type="data" format="obo" label="Gene Ontology File" /> <param name="gaf" type="data" format="gaf" label="Gene Association File" />