Mercurial > repos > jorrit > obotools

diff ontologizer.xml @ 13:bbcc2814e2a7

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author jorrit
date Tue, 26 Feb 2013 18:24:38 -0500
parents 0f1dc1045285
children 8ff260813c5e
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--- a/ontologizer.xml	Tue Feb 26 18:14:12 2013 -0500
+++ b/ontologizer.xml	Tue Feb 26 18:24:38 2013 -0500
@@ -1,6 +1,7 @@
 <tool id="ontologizer" name="ontologizer" version="0.0.14">
   <description>from http://compbio.charite.de/contao/</description>
   <requirements>
+    <requirement type="set_environment">ONTOLOGIZER_JAR_PATH</requirement>
     <requirement type="package" version="0.0.1">ontologizer-jar</requirement>
   </requirements>
   <command>java -Xmx2G -jar $ONTOLOGIZER_JAR --go $go --association $gaf --population $pop --studyset $study --dot 0.05 > $output</command>