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comparison ontologizer.xml @ 13:bbcc2814e2a7

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author jorrit
date Tue, 26 Feb 2013 18:24:38 -0500
parents 0f1dc1045285
children 8ff260813c5e
comparison
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12:2bbc96ae6ccb 13:bbcc2814e2a7
1 <tool id="ontologizer" name="ontologizer" version="0.0.14"> 1 <tool id="ontologizer" name="ontologizer" version="0.0.14">
2 <description>from http://compbio.charite.de/contao/</description> 2 <description>from http://compbio.charite.de/contao/</description>
3 <requirements> 3 <requirements>
4 <requirement type="set_environment">ONTOLOGIZER_JAR_PATH</requirement>
4 <requirement type="package" version="0.0.1">ontologizer-jar</requirement> 5 <requirement type="package" version="0.0.1">ontologizer-jar</requirement>
5 </requirements> 6 </requirements>
6 <command>java -Xmx2G -jar $ONTOLOGIZER_JAR --go $go --association $gaf --population $pop --studyset $study --dot 0.05 > $output</command> 7 <command>java -Xmx2G -jar $ONTOLOGIZER_JAR --go $go --association $gaf --population $pop --studyset $study --dot 0.05 > $output</command>
7 <inputs> 8 <inputs>
8 <param name="go" type="text" label="Gene ontology" /> 9 <param name="go" type="text" label="Gene ontology" />