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comparison ontologizer.xml @ 23:8ff260813c5e

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Uploaded
author jorrit
date Tue, 26 Feb 2013 20:21:57 -0500
parents bbcc2814e2a7
children f48064da7849
comparison
equal deleted inserted replaced
22:543851630f66 23:8ff260813c5e
1 <tool id="ontologizer" name="ontologizer" version="0.0.14"> 1 <tool id="ontologizer" name="ontologizer" version="0.0.15">
2 <description>from http://compbio.charite.de/contao/</description> 2 <description>from http://compbio.charite.de/contao/</description>
3 <requirements> 3 <requirements>
4 <requirement type="set_environment">ONTOLOGIZER_JAR_PATH</requirement> 4 <requirement type="package" version="0.0.2">ontologizer-jar</requirement>
5 <requirement type="package" version="0.0.1">ontologizer-jar</requirement>
6 </requirements> 5 </requirements>
7 <command>java -Xmx2G -jar $ONTOLOGIZER_JAR --go $go --association $gaf --population $pop --studyset $study --dot 0.05 > $output</command> 6 <command>java -Xmx2G -jar $ONTOLOGIZER_JAR --go $go --association $gaf --population $pop --studyset $study --dot 0.05 > $output</command>
8 <inputs> 7 <inputs>
9 <param name="go" type="text" label="Gene ontology" /> 8 <param name="go" type="text" label="Gene ontology" />
10 <param name="gaf" type="text" label="Gene association file" /> 9 <param name="gaf" type="text" label="Gene association file" />