Mercurial > repos > joachim-jacob > vstranformation

diff README @ 0:a48dde9abecf draft

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Uploaded initial version
author joachim-jacob
date Wed, 17 Jul 2013 04:06:12 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README	Wed Jul 17 04:06:12 2013 -0400
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+VSTransformation - 1.0.0
+=============================
+<joachim.jacob@vib.be>
+
+SUMMARY
+-------
+This tool takes in a count table generated from a mapping of RNA-seq data, 
+and performs a variance stabilizing transformation on these counts.
+	  
+REQUIREMENTS AND INSTALLATION
+-----------------------------
+Install this tool in your Galaxy via the Toolshed
+
+   ) Third party code installation
+	You need to have a working R environment available in your path,
+	with following dependencies installed:
+	- reshape
+	- ggplot2
+	- deseq
+	- knitr
+	- markdown
+
+   ) Integration into Galaxy
+	Just use the Management interface to integrate this tool.
+
+DETAILS AND ISSUES
+------------------
+   ) Soon dependencies will be resolved.