Mercurial > repos > joachim-jacob > vstranformation
comparison README @ 0:a48dde9abecf draft
Uploaded initial version
| author | joachim-jacob |
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| date | Wed, 17 Jul 2013 04:06:12 -0400 |
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| -1:000000000000 | 0:a48dde9abecf |
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| 1 VSTransformation - 1.0.0 | |
| 2 ============================= | |
| 3 <joachim.jacob@vib.be> | |
| 4 | |
| 5 SUMMARY | |
| 6 ------- | |
| 7 This tool takes in a count table generated from a mapping of RNA-seq data, | |
| 8 and performs a variance stabilizing transformation on these counts. | |
| 9 | |
| 10 REQUIREMENTS AND INSTALLATION | |
| 11 ----------------------------- | |
| 12 Install this tool in your Galaxy via the Toolshed | |
| 13 | |
| 14 ) Third party code installation | |
| 15 You need to have a working R environment available in your path, | |
| 16 with following dependencies installed: | |
| 17 - reshape | |
| 18 - ggplot2 | |
| 19 - deseq | |
| 20 - knitr | |
| 21 - markdown | |
| 22 | |
| 23 ) Integration into Galaxy | |
| 24 Just use the Management interface to integrate this tool. | |
| 25 | |
| 26 DETAILS AND ISSUES | |
| 27 ------------------ | |
| 28 ) Soon dependencies will be resolved. |