|
0
|
1 VSTransformation - 1.0.0
|
|
|
2 =============================
|
|
|
3 <joachim.jacob@vib.be>
|
|
|
4
|
|
|
5 SUMMARY
|
|
|
6 -------
|
|
|
7 This tool takes in a count table generated from a mapping of RNA-seq data,
|
|
|
8 and performs a variance stabilizing transformation on these counts.
|
|
|
9
|
|
|
10 REQUIREMENTS AND INSTALLATION
|
|
|
11 -----------------------------
|
|
|
12 Install this tool in your Galaxy via the Toolshed
|
|
|
13
|
|
|
14 ) Third party code installation
|
|
|
15 You need to have a working R environment available in your path,
|
|
|
16 with following dependencies installed:
|
|
|
17 - reshape
|
|
|
18 - ggplot2
|
|
|
19 - deseq
|
|
|
20 - knitr
|
|
|
21 - markdown
|
|
|
22
|
|
|
23 ) Integration into Galaxy
|
|
|
24 Just use the Management interface to integrate this tool.
|
|
|
25
|
|
|
26 DETAILS AND ISSUES
|
|
|
27 ------------------
|
|
|
28 ) Soon dependencies will be resolved.
|
