Mercurial > repos > jjohnson > translate_bed_sequences

changeset 4:aa93f7910259

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Fix test case
author Jim Johnson <jj@umn.edu>
date Thu, 30 Jan 2014 13:26:58 -0600
parents 3b526a780849
children c626a939eef7
files test-data/translated_bed_sequences.fa
diffstat 1 files changed, 10 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/test-data/translated_bed_sequences.fa	Thu Jan 23 09:10:16 2014 -0600
+++ b/test-data/translated_bed_sequences.fa	Thu Jan 30 13:26:58 2014 -0600
@@ -1,26 +1,26 @@
 >JUNC00019210_2 pep:novel chromosome:GRCh37:15:40902460:40907575:1 depth:1
 SYENSEKVRNGRNKKLEDNYCEIT
->JUNC00019210_3 pep:novel chromosome:GRCh37:15:40902461:40907552:1 depth:1
-HMKIVRKSEMEGIRN*
+>JUNC00019210_3 pep:novel chromosome:GRCh37:15:40902461:40907549:1 depth:1
+HMKIVRKSEMEGIRN
 >JUNC00000003_1 pep:novel chromosome:GRCh37:9:17406:18053:-1 depth:1
 APWTSGPCRYKKYVFLDPLAGAVTKTHVMLGAE
->JUNC00000003_2 pep:novel chromosome:GRCh37:9:17435:18052:-1 depth:1
-PPGRAGPAGTRSMSSWTPWLVL*
+>JUNC00000003_2 pep:novel chromosome:GRCh37:9:17438:18052:-1 depth:1
+PPGRAGPAGTRSMSSWTPWLVL
 >JUNC00000003_3 pep:novel chromosome:GRCh37:9:17404:18051:-1 depth:1
 PLDERALQVQEVCLPGPPGWCCNKDPCDAGGRD
 >JUNC00000874_2 pep:novel chromosome:GRCh37:8:27369376:27370079:1 depth:1
 PTSCNPSDMSHGYVTVKGYHKAKATHRGPWLVA
 >JUNC00001897_1 pep:novel chromosome:GRCh37:7:99077597:99079392:1 depth:1
 HLLSLFFQLGVHICIPNFRNNSVSHCTQLRVLL
->JUNC00001897_2 pep:novel chromosome:GRCh37:7:99077598:99079363:1 depth:1
-IYCLYFSNLVCISVYPTSEITV*
+>JUNC00001897_2 pep:novel chromosome:GRCh37:7:99077598:99079360:1 depth:1
+IYCLYFSNLVCISVYPTSEITV
 >JUNC00002152_1 pep:novel chromosome:GRCh37:7:148909514:148910831:1 depth:1
 DQQDLADRDIPTDPNSGENKSLSSQHMTFCHGS
->JUNC00002152_2 pep:novel chromosome:GRCh37:7:148909515:148910814:1 depth:1
-ISRIWQTEIFPRIPIQVRTRVSHLST*
+>JUNC00002152_2 pep:novel chromosome:GRCh37:7:148909515:148910811:1 depth:1
+ISRIWQTEIFPRIPIQVRTRVSHLST
 >JUNC00002625_1 pep:novel chromosome:GRCh37:6:41766614:41767580:-1 depth:1
 LKDSGGLAVIIERRLGSMSSLT
 >JUNC00002625_3 pep:novel chromosome:GRCh37:6:41766612:41767578:-1 depth:1
 KRFRWSGRNHREKIGVHVVFDQ
->JUNC00002772_1 pep:novel chromosome:GRCh37:6:84856494:84862316:-1 depth:1
-LKMKSEAVMNQFENSMRRYL*
+>JUNC00002772_1 pep:novel chromosome:GRCh37:6:84856497:84862316:-1 depth:1
+LKMKSEAVMNQFENSMRRYL