Mercurial > repos > jjohnson > star_fusion

diff star_fusion.xml @ 2:1c017ffc3f45 draft default tip

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author jjohnson
date Thu, 05 Oct 2017 10:01:02 -0400
parents 5748e43a73e0
children
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--- a/star_fusion.xml	Thu Oct 05 09:26:19 2017 -0400
+++ b/star_fusion.xml	Thu Oct 05 10:01:02 2017 -0400
@@ -235,7 +235,7 @@
     </inputs>
 
     <outputs>
-        <data format="bam" name="out_bam" label="${tool.name} on ${on_string}: Aligned.sortedByCoord.out.bam" from_work_dir="star-fusion.fusion_candidates.final"/>
+        <data format="bam" name="out_bam" label="${tool.name} on ${on_string}: Aligned.sortedByCoord.out.bam" from_work_dir="Aligned.sortedByCoord.out.bam"/>
         <data format="fastqsanger" name="output_reads_1" label="${tool.name} on ${on_string}: fusion_evidence_reads_1" from_work_dir="star-fusion.fusion_evidence_reads_1.fq">
             <filter>input_params['input_source'] == 'use_fastq' and str(input_params['optional_outputs']).find('extract_fusion_reads') > 0</filter>
         </data>