Mercurial > repos > jjohnson > star_fusion
comparison star_fusion.xml @ 2:1c017ffc3f45 draft default tip
Uploaded
| author | jjohnson |
|---|---|
| date | Thu, 05 Oct 2017 10:01:02 -0400 |
| parents | 5748e43a73e0 |
| children |
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| 1:5748e43a73e0 | 2:1c017ffc3f45 |
|---|---|
| 233 </when> | 233 </when> |
| 234 </conditional> | 234 </conditional> |
| 235 </inputs> | 235 </inputs> |
| 236 | 236 |
| 237 <outputs> | 237 <outputs> |
| 238 <data format="bam" name="out_bam" label="${tool.name} on ${on_string}: Aligned.sortedByCoord.out.bam" from_work_dir="star-fusion.fusion_candidates.final"/> | 238 <data format="bam" name="out_bam" label="${tool.name} on ${on_string}: Aligned.sortedByCoord.out.bam" from_work_dir="Aligned.sortedByCoord.out.bam"/> |
| 239 <data format="fastqsanger" name="output_reads_1" label="${tool.name} on ${on_string}: fusion_evidence_reads_1" from_work_dir="star-fusion.fusion_evidence_reads_1.fq"> | 239 <data format="fastqsanger" name="output_reads_1" label="${tool.name} on ${on_string}: fusion_evidence_reads_1" from_work_dir="star-fusion.fusion_evidence_reads_1.fq"> |
| 240 <filter>input_params['input_source'] == 'use_fastq' and str(input_params['optional_outputs']).find('extract_fusion_reads') > 0</filter> | 240 <filter>input_params['input_source'] == 'use_fastq' and str(input_params['optional_outputs']).find('extract_fusion_reads') > 0</filter> |
| 241 </data> | 241 </data> |
| 242 <data format="fastqsanger" name="output_reads_2" label="${tool.name} on ${on_string}: fusion_evidence_reads_2" from_work_dir="star-fusion.fusion_evidence_reads_2.fq"> | 242 <data format="fastqsanger" name="output_reads_2" label="${tool.name} on ${on_string}: fusion_evidence_reads_2" from_work_dir="star-fusion.fusion_evidence_reads_2.fq"> |
| 243 <filter>input_params['input_source'] == 'use_fastq' and str(input_params['optional_outputs']).find('extract_fusion_reads') > 0</filter> | 243 <filter>input_params['input_source'] == 'use_fastq' and str(input_params['optional_outputs']).find('extract_fusion_reads') > 0</filter> |