Mercurial > repos > jjohnson > spectrast

diff spectrast_search.xml @ 3:7f02fc51bddf draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/spectrast commit 379705f578f9a0465f497894c7d2b5f68b6a55e6-dirty
author jjohnson
date Wed, 25 Jul 2018 10:58:17 -0400
parents e67b0cc10377
children
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--- a/spectrast_search.xml	Wed Jun 20 12:58:33 2018 -0400
+++ b/spectrast_search.xml	Wed Jul 25 10:58:17 2018 -0400
@@ -27,6 +27,7 @@
             #end for
         #end if
         python $__tool_directory__/spectrast_params.py 
+           --mode=search
            #if $spectrastParams:
                '$spectrastParams'
            #end if
@@ -57,7 +58,7 @@
 #if $candidate_selection_and_scoring.precursorMzTolerance is not None:
 precursorMzTolerance = $candidate_selection_and_scoring.precursorMzTolerance
 #end if
-#if str($candidate_selection_and_scoring.precursorMzUseAverage) != 'None':
+#eif str($candidate_selection_and_scoring.precursorMzUseAverage) != 'None':
 precursorMzUseAverage = $candidate_selection_and_scoring.precursorMzUseAverage
 #end if
 #if str($candidate_selection_and_scoring.searchAllCharges) != 'None':