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view tool_dependencies.xml @ 3:458d28b65750

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Correct name for tool_dependencies.xml
author Jim Johnson <jj@umn.edu>
date Fri, 14 Sep 2012 07:26:01 -0500
parents tool_dependency.xml@5248f48fa4ee
children ceaa79a5ee16
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line source

<?xml version="1.0"?>
<tool_dependency>
    <set_environment version="1.0">
        <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR/dist</environment_variable>
    </set_environment>
    <package name="snpEff" version="3.0f">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_latest_core.zip/download</action>
                <action type="shell_command">mkdir -p $INSTALL_DIR/dist/</action>
                <action type="shell_command">pwd</action>
                <action type="shell_command">ls</action>
                <action type="shell_command">cp -rp *  $INSTALL_DIR/dist/</action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>

</tool_dependency>