comparison tool_dependencies.xml @ 24:f22f28cd881e

Update for snpEff v3.2

23:50c1a8ff6c82

<?xml version="1.0"?>
<tool_dependency>
    <package name="snpEff" version="3.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_v3_1_core.zip</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>

24:f22f28cd881e

<?xml version="1.0"?>
<tool_dependency>
    <package name="snpEff" version="3.2">
        <repository toolshed="http://localhost:19009" name="snpeff_3_2" owner="jimmy" changeset_revision="b793dbd0644e" />
    </package>
</tool_dependency>