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view tool_dependencies.xml @ 21:077c84a53846

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JAVA_JAR_PATH action changed to set_to in tool_dependencies.xml
author Jim Johnson <jj@umn.edu>
date Tue, 27 Nov 2012 08:22:36 -0600
parents 1cae7fb31da7
children f22f28cd881e
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="snpEff" version="3.1">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://sourceforge.net/projects/snpeff/files/snpEff_v3_1_core.zip</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR</destination_directory>
                </action>
                <action type="set_environment">
                    <environment_variable name="JAVA_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/scripts</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>