Mercurial > repos > jjohnson > snpeff_with_dep
comparison tool_dependencies.xml @ 14:ef4598ea7179
Add SnpSift dependency
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 21 Sep 2012 16:00:25 -0500 |
| parents | d57983929080 |
| children | bd23bbee9883 |
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| 13:d57983929080 | 14:ef4598ea7179 |
|---|---|
| 18 </actions> | 18 </actions> |
| 19 </install> | 19 </install> |
| 20 <readme> | 20 <readme> |
| 21 </readme> | 21 </readme> |
| 22 </package> | 22 </package> |
| 23 <package name="SnpSift" version="1.7"> | |
| 24 <install version="1.0"> | |
| 25 <actions> | |
| 26 <action type="shell_command">mkdir -p SnpSift; cd SnpSift; wget http://sourceforge.net/projects/snpeff/files/SnpSift_v1_7.jar</action> | |
| 27 <action type="set_environment"> | |
| 28 <environment_variable name="JAVA_JAR_PATH" action="prepend_to">$INSTALL_DIR/SnpSift</environment_variable> | |
| 29 </action> | |
| 30 </actions> | |
| 31 </install> | |
| 23 | 32 |
| 24 </tool_dependency> | 33 </tool_dependency> |
| 25 | 34 |