Mercurial > repos > jjohnson > snpeff_with_dep

diff tool_dependencies.xml @ 14:ef4598ea7179

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Add SnpSift dependency
author Jim Johnson <jj@umn.edu>
date Fri, 21 Sep 2012 16:00:25 -0500
parents d57983929080
children bd23bbee9883
line wrap: on
line diff
--- a/tool_dependencies.xml	Fri Sep 21 15:16:49 2012 -0500
+++ b/tool_dependencies.xml	Fri Sep 21 16:00:25 2012 -0500
@@ -20,6 +20,15 @@
         <readme>
         </readme>
     </package>
+    <package name="SnpSift" version="1.7">
+        <install version="1.0">
+            <actions>
+                <action type="shell_command">mkdir -p SnpSift; cd SnpSift; wget http://sourceforge.net/projects/snpeff/files/SnpSift_v1_7.jar</action>
+                <action type="set_environment">
+                    <environment_variable name="JAVA_JAR_PATH" action="prepend_to">$INSTALL_DIR/SnpSift</environment_variable>
+                </action>
+            </actions>
+        </install>
 
 </tool_dependency>