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diff snpEff_databases.xml @ 18:36f3c82323e6

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Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
author Jim Johnson <jj@umn.edu>
date Tue, 13 Jan 2015 13:36:11 -0600
parents 3790e16a0be0
children bb0797deab78
line wrap: on
line diff
--- a/snpEff_databases.xml	Mon Nov 10 09:33:36 2014 -0600
+++ b/snpEff_databases.xml	Tue Jan 13 13:36:11 2015 -0600
@@ -1,11 +1,13 @@
-<tool id="snpEff_databases" name="SnpEff Available Databases" version="4.0.0">
+<tool id="snpEff_databases" name="SnpEff Available Databases" version="@WRAPPER_VERSION@.0">
     <description></description>
     <expand macro="requirements" />
     <macros>
         <import>snpEff_macros.xml</import>
     </macros>
     <command>
+<![CDATA[
     java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases |  grep -v '^---' | sed 's/^Genome/#Genome/' | sed  's/  *//g' > $snpeff_dbs 
+]]>
     </command>
     <inputs>
     </inputs>