Mercurial > repos > jjohnson > snpeff
comparison snpEff_databases.xml @ 18:36f3c82323e6
Use tool_data_table with key and version columns added to allow for multiple versions in a .loc file
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 13 Jan 2015 13:36:11 -0600 |
| parents | 3790e16a0be0 |
| children | bb0797deab78 |
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| 17:13d81e5226cd | 18:36f3c82323e6 |
|---|---|
| 1 <tool id="snpEff_databases" name="SnpEff Available Databases" version="4.0.0"> | 1 <tool id="snpEff_databases" name="SnpEff Available Databases" version="@WRAPPER_VERSION@.0"> |
| 2 <description></description> | 2 <description></description> |
| 3 <expand macro="requirements" /> | 3 <expand macro="requirements" /> |
| 4 <macros> | 4 <macros> |
| 5 <import>snpEff_macros.xml</import> | 5 <import>snpEff_macros.xml</import> |
| 6 </macros> | 6 </macros> |
| 7 <command> | 7 <command> |
| 8 <![CDATA[ | |
| 8 java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' > $snpeff_dbs | 9 java -jar \$SNPEFF_JAR_PATH/snpEff.jar databases | grep -v '^---' | sed 's/^Genome/#Genome/' | sed 's/ *//g' > $snpeff_dbs |
| 10 ]]> | |
| 9 </command> | 11 </command> |
| 10 <inputs> | 12 <inputs> |
| 11 </inputs> | 13 </inputs> |
| 12 <outputs> | 14 <outputs> |
| 13 <data format="tabular" name="snpeff_dbs" label="${tool.name} available databases" /> | 15 <data format="tabular" name="snpeff_dbs" label="${tool.name} available databases" /> |