comparison data_manager/data_manager_snpEff_download.py @ 6:eb394dd65c98

Add mutli-select to data managers from Bjoern, filter unique database options in snpEff_download.xml snpEff.xml

5:8952990fcab9

    os.mkdir( target_directory )
    data_manager_dict = {}


    #Create SnpEff Reference Data
    download_database(data_manager_dict, target_directory, options.jar_path,options.config,options.genome_version,options.organism)

    #save info to json file
    open( filename, 'wb' ).write( to_json_string( data_manager_dict ) )

if __name__ == "__main__": main()

6:eb394dd65c98

    os.mkdir( target_directory )
    data_manager_dict = {}


    #Create SnpEff Reference Data
    for genome_version, organism in zip(options.genome_version.split(','), options.organism.split(',')):
        download_database( data_manager_dict, target_directory, options.jar_path, options.config, genome_version, organism )

    #save info to json file
    open( filename, 'wb' ).write( to_json_string( data_manager_dict ) )

if __name__ == "__main__": main()