Mercurial > repos > jjohnson > snpeff

diff data_manager/data_manager_snpEff_download.py @ 6:eb394dd65c98

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Add mutli-select to data managers from Bjoern, filter unique database options in snpEff_download.xml snpEff.xml
author Jim Johnson <jj@umn.edu>
date Thu, 28 Nov 2013 08:16:11 -0600
parents 8952990fcab9
children
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--- a/data_manager/data_manager_snpEff_download.py	Wed Nov 27 09:11:32 2013 -0600
+++ b/data_manager/data_manager_snpEff_download.py	Thu Nov 28 08:16:11 2013 -0600
@@ -104,7 +104,8 @@
 
 
     #Create SnpEff Reference Data
-    download_database(data_manager_dict, target_directory, options.jar_path,options.config,options.genome_version,options.organism)
+    for genome_version, organism in zip(options.genome_version.split(','), options.organism.split(',')):
+        download_database( data_manager_dict, target_directory, options.jar_path, options.config, genome_version, organism )
 
     #save info to json file
     open( filename, 'wb' ).write( to_json_string( data_manager_dict ) )