Mercurial > repos > jjohnson > shear
comparison shear_sv.xml @ 10:2620f7984418
Update to shear version 0.2.5
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 08 Nov 2013 09:21:17 -0600 |
| parents | 03071ff2e5c9 |
| children |
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| 9:03071ff2e5c9 | 10:2620f7984418 |
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| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <tool id="shear_sv" name="SHEAR-SV" version="0.0.3"> | 2 <tool id="shear_sv" name="SHEAR-SV" version="0.0.5"> |
| 3 <description>find SVs and estimate the heterogeneity levels from a BAM</description> | 3 <description>find SVs and estimate the heterogeneity levels from a BAM</description> |
| 4 <requirements> | 4 <requirements> |
| 5 <requirement type="package" version="0.2.4">shear</requirement> | 5 <requirement type="package" version="0.2.5">shear</requirement> |
| 6 <requirement type="package" version="0.1.18">samtools</requirement> | 6 <requirement type="package" version="0.1.18">samtools</requirement> |
| 7 <requirement type="package" version="0.6.2">bwa</requirement> | 7 <requirement type="package" version="0.6.2">bwa</requirement> |
| 8 <requirement type="package" version="1.0.1">crest</requirement> | 8 <requirement type="package" version="1.0.1">crest</requirement> |
| 9 <requirement type="package" version="latest">kent</requirement> | 9 <requirement type="package" version="latest">blat_server</requirement> |
| 10 <requirement type="package" version="3">cap3</requirement> | 10 <requirement type="package" version="3">cap3</requirement> |
| 11 </requirements> | 11 </requirements> |
| 12 <!-- | 12 <!-- |
| 13 <version_command></version_command> | 13 <version_command></version_command> |
| 14 --> | 14 --> |