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annotate tool_dependencies.xml @ 6:0158f7356ffd

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Add new outputs and params to shear_sv.xml for version 2.3
author Jim Johnson <jj@umn.edu>
date Mon, 21 Oct 2013 08:54:58 -0500
parents aaaa5a071ff0
children 8180f6b0249b
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="samtools" version="0.1.18">
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4 <repository changeset_revision="5f7ec5048224" name="package_samtools_0_1_18" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="bwa" version="0.6.2">
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7 <repository changeset_revision="8be5fbfc1548" name="package_bwa_0_6_2" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="kent" version="latest">
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10 <repository changeset_revision="b05b788e3989" name="package_kent" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="crest" version="1.0.1">
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13 <repository changeset_revision="89a9d6ce7f96" name="package_crest_1_0_1" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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a82400332451 Use shear_wrapper.py to generate reference indexes when needed
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14 <readme>
a82400332451 Use shear_wrapper.py to generate reference indexes when needed
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15 CREST requires:
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16 Bioperl package Bio::DB:Sam
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17 cap3 which only has binary executable downloads from: http://seq.cs.iastate.edu/cap3.html
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18 </readme>
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19 </package>
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aaaa5a071ff0 Update to SHEAR v 0.2.3
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20 <package name="shear" version="0.2.3">
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21 <repository changeset_revision="8bcf811b9c1e" name="package_shear_0_2_3" owner="jjohnson" toolshed="http://testtoolshed.g2.bx.psu.edu" />
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22 </package>
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23
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24 </tool_dependency>