Mercurial > repos > jjohnson > scythe
view test-data/trimmed_sequences.fastq @ 1:b0276d1141fe default tip
Fix test case
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Thu, 30 Jan 2014 13:10:12 -0600 |
parents | 08439b004404 |
children |
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@SOLEXA2_0414:3:1:11146:1065#0/1 N + B @SOLEXA2_0414:3:1:12658:1069#0/1 NCTACATACAGTTGTAAGGTCTGGTTTGTCCTAGGCAGAGGACACTGCGGGAGATTCAGAGTATGTAGCA + BOIOKPTTTT_________________________________________________TYYYYY_____ @SOLEXA2_0414:3:1:17191:1069#0/1 NAGCAATCTATAGTTTGTGTATTGCCAAGTCTGTTGTGAGCCCTTC + BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:6993:1073#0/1 NTGGATCTCCCGCAGTGTCCTAAATGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGAC + BJJJJVVVWVb__bb______bb________________b__________Y[[[[b__b__bb__YYYYY_______________ @SOLEXA2_0414:3:1:10702:1075#0/1 NCTACATTACTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACGACTGTTACTCTGAATCTCCCGCAGTGTCCTCTGC + BIHKIQTQTQ[[[YPVTVVVWWWWVRRPRTVPTTTVVVTTVTVTVVVVVTTVVVVRRPLRTQTJQ_____YYVYYVVTNVXWWVW @SOLEXA2_0414:3:1:12096:1078#0/1 NTGCGATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT + BEKEEJOHHHTTVVV_____[[Y[[WWVXXXVXXWRRPTTWXXXWWQQWXWWWTWKKLLLLLLHRVTVVNTTVVT_____YWYYY @SOLEXA2_0414:3:1:12624:1071#0/1 NTGCGATAGTGTCCTGTGTGCCCCTGCACATGCCTGTGGCTTCCCGGGCTTCTGACCACATCCCCACCATCTTTGTGC + BQLLMTTTTT__________YYYYY________b___________BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:13769:1080#0/1 NAGCAATCTAAAACCCAAAGTATATAAGAAGGGTATGGTTGATTATGTTTTTCTACATATTATTTGACATACTTCTATCTTCCCA + BPPPPXXXXX_b_b_b_bbb_b___YYYYYWXXXXWWWWW_b__b_____QQQQQb_b_b_b_bQQZ___b_b____________ @SOLEXA2_0414:3:1:13956:1081#0/1 NTGCGATCTCAGTCTCCTGAGTAGCTGGGATCTAGCACTCAGAAATGAGAGATGAAAAGGCTAATTCACAAAGTAGCCAAAAATA + BPPPNWWWWW__b__b_bb_____b_b__b__b_bb_bbb______________bb_____b__bbb__bYYYWY________YO @SOLEXA2_0414:3:1:14801:1076#0/1 NTGCGATGGACCAGCTGGAAAATTGGTGTTGTCGTCGGTGCAAATTCTGTCACGTTTGTGGAAGGCGACATCAGGCTACAAGGGG + BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:16010:1079#0/1 NAGCAATTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCG + BKJQQVWVVV_______________WYYYY_______________V____Y[[[[________________________ @SOLEXA2_0414:3:1:17165:1075#0/1 N + B @SOLEXA2_0414:3:1:19504:1081#0/1 NAGCAATACTTCTATCTTCCCATGTTCTTACTATAGTTTGTGTATTGCCAAGTCTGTTGTGAGCCACATAATAAGGTGTCAAAAT + BJJOJRRQQRYYYYY__b_______[[[[PWWTWWYYYYY[Y[[[YYYYUTTWVVY[YY[_______________VTTTVTVVTV @SOLEXA2_0414:3:1:19703:1080#0/1 NAGCAATATTGAATTAAATATATGCCAGTGGACTACTAAAACCCAAAGTATATAA + BIKOIVWVVVY[Y[YVVTVTYYYYY_W___BBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:6962:1084#0/1 NTGCGATCTGAATCTCCCGCAGTGTCCGGGTGGGGTCAGAAAAATGGGCAGCTCAACTGCAGGTACACGTAGTGCGACCAGTGCC + BEMEEKLQJJ__________Y[[[[XXXXXXWQQQQYYYY__QQQ___PWWWXWV_____BBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:8715:1091#0/1 NTGCGATCAACCATTCAGACACCAGCAGAAGTGTTCTGGAATCCTATGTGAGGGACATACATTCAGACCACGGCAGAAGTGTTCT + BGKEEHMKHL[[[[[_____Y[[[[_______________W_________YYYYY_______________[[Y[Y[[[Y[[[[[[ @SOLEXA2_0414:3:1:12077:1083#0/1 NAGCAATATGCTTTGGCCACAAAATAAGTGCACTGTGCAATATCAAGTGTTTCAGCAAGTTTTTGGAATCTCAAGCACATTTTGA + BJJJJQRPPObbb____b__b__QQQQQ_________b_____b_[[[[[______V_____________b____YY[[[b___O @SOLEXA2_0414:3:1:13392:1083#0/1 NTGCGATCCGGACACTGCGGGAGATTCAGAGTAACAGTTGTAAGGTCTGGTTTGTCCTATTTGTGTTTGAATTTGGCTCTACGTG + BKJQJORQPP_______________TWTWTWWWTTYYYYY_____YYYYWYYYYYYYYYYWWWWWVVTTV______Y_______B @SOLEXA2_0414:3:1:14856:1092#0/1 NTGCGATGTGTCCTTAGGACAAACCAGACCTTACAACTGTAAGCCTGGCTTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGA + BIIOHTTSTT_____[[[[YYYYYYVYYYY______________W[[[YY__________V[[[[____WXVVXX___W_XXWXV @SOLEXA2_0414:3:1:17070:1089#0/1 NTGCGATCTGAATCTCCCGCAGTGTCCCACTCTTAGGTCACTTAGCATGTTCATTAGAGTACTCTGAATCTCCCGCAGTGTCCTC + BHMOGRTTTTY[[[Y__________TVVVTYVYYY____WYYYYRPRWRR[[Y[[_____WWWTWWTWWWYYYYY[R[[YYYYYY @SOLEXA2_0414:3:1:18860:1082#0/1 NAGCAATACAGTTGTAAGGTCTGGTTTGTCCTCACTCAAATGTCATCTCGAATTGTAGTTCTCATAAT + BHOKHSWTTT____________________BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:18912:1089#0/1 N + B @SOLEXA2_0414:3:1:3923:1105#0/1 NAGCAATAGTCCAGGGATACAGAACCCACTGATACAGAGGCCCAGCTGTAGTTCTATTATTGCTCAGATCGGAAGAGCGGTTCAG + BNNNQVWVVV__bbb__b_bb____b________b__Z_______[[[[YYYYYY_____b___bb____YWWYYVVTVVYYYYY @SOLEXA2_0414:3:1:6494:1099#0/1 N + B @SOLEXA2_0414:3:1:8413:1097#0/1 NTGCGATCCATACCCTTCTTATATACTTTGGGTTTTAGTAGTCCACTGGCATATATTTAATTCAATACATACTCATTAAGCAATG + BGIGEMQLNQ_______________VXXXX_____WWXXX[YY[[_____WYRYY___________V___YLYYYYYYPY_____ @SOLEXA2_0414:3:1:9865:1095#0/1 NCTACATTAATTGTTTTAATTTTTATTTATTTATTTTTTTGAGACGGAGTCTCGCTGATGTAGCAGATCGGAAGAGCGGTTCAGC + BKKJKRTTST_____QQQ_b[[[[[QQQQ_QQQbQQQQQQQ_________bb__________________[[[[Y__________ @SOLEXA2_0414:3:1:10606:1102#0/1 NTGCGATATTTGGAACTTCATGTGTCTTTTGTATTGCTTGATAGCAGCATAGAATATGTGAGGTATTTTTGGCTACTTTGTGAAT + BMMMMTUTTRTTVWV_____b___b__b_QQQQ__[Y[[YYYYYY_______________[[[[[YYYQQQ____BBBBBBBBBB @SOLEXA2_0414:3:1:11267:1102#0/1 NCTACATTACTCTGAATCTCCCGCAGTGTCCGAGATCGCACCACTGCACCCCAGCCTGGGCGACATGTAGCA + BEGGEJLHIK______________RTWWWWY[Y[[________________QM__YYYYYXWJVX_____BB @SOLEXA2_0414:3:1:13556:1104#0/1 NTGCGATTTACAACCGTTACTCTGAATCTCCCGCAGTGTCCAGGACAAAC + BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:13625:1097#0/1 NTGCGATCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACAACTGTATCGCAAA + BJKJJTUUST___b_b_____b______________________________bW_bb__bb____[[Y[YYYYYY @SOLEXA2_0414:3:1:14055:1098#0/1 NAGCAATCTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCAGGACAA + BMMMNWWWWWbbb________bb_______b_^__________bbb_________bb_b__b__b__b_bb____[Y[Y[VQWVV @SOLEXA2_0414:3:1:14195:1099#0/1 NTGCGATCTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATATCGCAAAGATC + BPPPNVWVWV_b__bbb____bbb__bb__b_______b___bbQQ_b___bb_bb__b____b_b____b_bb___b____b__ @SOLEXA2_0414:3:1:15892:1106#0/1 NTGCGATAGACACATGAAGTTCCAAATTATTTTTTAACAATTTTTAAGGGAGACTGAGGCGAGAGAATCACTTGAGCCTGAGAGA + BPOQMVWVVV_bbb_bb_b_b__________QQQQQbbb_b_b___b__b__________b____Z___________b_b____Z @SOLEXA2_0414:3:1:18397:1101#0/1 NTGCGATATGGTTGATTATGTTTTTCTACATATTATTTGACATACTTCTATCTTCCCATGTTCTTACTATAGTTTGTGTATTGCC + BHIKHWTRTTYYYYYXXVWWYYYQQOOOWWY[[[[__QQ_WWWTWXXXWW_______________YYYYYXXXXXWWWWWYYYYR @SOLEXA2_0414:3:1:4546:1111#0/1 NCTACATCAAAAACATGCGTATGGACAAACCAGACCTTACAACTGTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGACAAAC + BOIHKLRNMQXWWWQQ______________________________________________^_____________________Y @SOLEXA2_0414:3:1:5840:1112#0/1 NTGCGATCTTAAAAATTGTTAAAAAATAATTTGGAACTTCATGTGTCTTTTGTATTGCTTGATAGCAGCATAGAATATGTGAGGT + BQKKJRQONNKRNNL__________QQQQQVVVTTSSRSSQYYYYYYYYYQQQQ______BBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:6252:1110#0/1 NTGCGATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT + BKIKHNRROR_b____b_____________________b___bbb_QQ_______________Q_YYYYY___T________W__ @SOLEXA2_0414:3:1:6533:1111#0/1 NCTACATGAGGGCGCTCGTTCTCCTCTAAACAAAACTTGTGGAAGGGCTCACAACAGACTTGGCAATACACAAACTATAGTAAGA + BPPPPWWVVV____bb_bbbbbb_bbb____bQQQQ_b___b_b_____bb_bb____b_bb__b_bbbbb__b___________ @SOLEXA2_0414:3:1:7569:1113#0/1 NAGCAATTCTAAACAAAACTTGTGGAAGGGCTCACAACAGACTTGGCAATACACAAACTATAGTAAGAACATGGGAAGATAGAAG + BIKOOPTTTT_____QQQQ_YYYYYYYYYY_____YYYYY___________________________________YQYYY___Y_ @SOLEXA2_0414:3:1:7605:1117#0/1 NAGCAATCCTTTAGTTCTAGTGTCTAGGGATATGCAAAGTCAGAAAAAAC + BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:13482:1108#0/1 NCTACATCTGAATCTCCCGCAGTGTCCGAGATCGCACCACTGCACCCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAATA + BLLLQVWWWVbb__bb___b_____b_____bb_b____________QQ_bbb_bY____OTVVOYVYYYVVSTTWWTTWYQQQQ @SOLEXA2_0414:3:1:14990:1109#0/1 NTGCGATCTGGTTTGTCCTAGGCAGAGGACACTGCGGGAGATTCAGAGTAACAGTTGTAAGGCCTGGTTTGTCCTGGACACTGCG + BIGGJNRPOOYYYYYVWXWV_____YYRPWYYYYYXWWRWYYYYYVVTVTXXVWX_________Y[Y[[[_____YYYYY_____ @SOLEXA2_0414:3:1:15871:1113#0/1 NTGCGATATTTTTAAGGGAGACTGAGGCGAGAGAATCACTTGAGCCTGAGAGATCATGAGGACTCTTATAGGCCATGCTAAGACG + BJJOHRTRTT[QQQ[___b____b______[V[[[bbbbb_b___b_b_____________________________________ @SOLEXA2_0414:3:1:17840:1114#0/1 NAGCAATCTCTAGATTACTTATCATACCTAATACAATGTAAATAGTTGTTATACTGTATTGTTTAGGAAATAAT + BOIIIVWWVV_____Y[[[[[[[W[TWTWRYYYYYY[YYY____R_____BBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:18083:1109#0/1 NAGCAATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT + BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:3606:1121#0/1 NTGCGATGCATTAATTGTGTCTTTAAGGGTTAAACAGAGGCTCACAACAGACTTGACAATACACAAACTATAGTAAGAACATGGG + BIIKHQTTSS[[[Y[_____YYYYYTWVVV_____b___^_________________________YYYYY_____BBBBBBBBBB @SOLEXA2_0414:3:1:4029:1119#0/1 N + B @SOLEXA2_0414:3:1:10939:1119#0/1 NCTACATACAGTTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTATGTAGCA + BQKQLVWVWV_____[Y[[[__________BBBBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:11098:1122#0/1 NAGCAATGTTGAGTCCAGGGATACAGAACCCACTGATACAGAGGCCCAGCTGTAGTTCTATTACCAAGTTTTGTACCTTTGTAGC + BEMGGQQORMVVVVTWWWWWOVTVVWRWWW_______________[[T[YTVTTV_____BBBBBBBBBBBBBBBBBBBBBBBBB @SOLEXA2_0414:3:1:12110:1126#0/1 NTGCGATTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTCAGATCGCAAAGATCGGAAGAGCGGTTCAGCAGGAATGCCG + BIIIHQRRRQ[[[[[b__bb_b___YYYYY_____UWWWT[T[[Y__bb_________Y______YYYYYQWWWW___S_BBBBB