annotate test-data/trimmed_sequences.fastq @ 1:b0276d1141fe default tip

Fix test case
author Jim Johnson <jj@umn.edu>
date Thu, 30 Jan 2014 13:10:12 -0600
parents 08439b004404
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1 @SOLEXA2_0414:3:1:11146:1065#0/1
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5 @SOLEXA2_0414:3:1:12658:1069#0/1
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6 NCTACATACAGTTGTAAGGTCTGGTTTGTCCTAGGCAGAGGACACTGCGGGAGATTCAGAGTATGTAGCA
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8 BOIOKPTTTT_________________________________________________TYYYYY_____
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9 @SOLEXA2_0414:3:1:17191:1069#0/1
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10 NAGCAATCTATAGTTTGTGTATTGCCAAGTCTGTTGTGAGCCCTTC
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12 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
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13 @SOLEXA2_0414:3:1:6993:1073#0/1
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14 NTGGATCTCCCGCAGTGTCCTAAATGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGAC
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16 BJJJJVVVWVb__bb______bb________________b__________Y[[[[b__b__bb__YYYYY_______________
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17 @SOLEXA2_0414:3:1:10702:1075#0/1
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18 NCTACATTACTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACGACTGTTACTCTGAATCTCCCGCAGTGTCCTCTGC
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19 +
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20 BIHKIQTQTQ[[[YPVTVVVWWWWVRRPRTVPTTTVVVTTVTVTVVVVVTTVVVVRRPLRTQTJQ_____YYVYYVVTNVXWWVW
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21 @SOLEXA2_0414:3:1:12096:1078#0/1
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22 NTGCGATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT
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23 +
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24 BEKEEJOHHHTTVVV_____[[Y[[WWVXXXVXXWRRPTTWXXXWWQQWXWWWTWKKLLLLLLHRVTVVNTTVVT_____YWYYY
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25 @SOLEXA2_0414:3:1:12624:1071#0/1
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26 NTGCGATAGTGTCCTGTGTGCCCCTGCACATGCCTGTGGCTTCCCGGGCTTCTGACCACATCCCCACCATCTTTGTGC
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28 BQLLMTTTTT__________YYYYY________b___________BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
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29 @SOLEXA2_0414:3:1:13769:1080#0/1
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30 NAGCAATCTAAAACCCAAAGTATATAAGAAGGGTATGGTTGATTATGTTTTTCTACATATTATTTGACATACTTCTATCTTCCCA
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31 +
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32 BPPPPXXXXX_b_b_b_bbb_b___YYYYYWXXXXWWWWW_b__b_____QQQQQb_b_b_b_bQQZ___b_b____________
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33 @SOLEXA2_0414:3:1:13956:1081#0/1
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34 NTGCGATCTCAGTCTCCTGAGTAGCTGGGATCTAGCACTCAGAAATGAGAGATGAAAAGGCTAATTCACAAAGTAGCCAAAAATA
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35 +
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36 BPPPNWWWWW__b__b_bb_____b_b__b__b_bb_bbb______________bb_____b__bbb__bYYYWY________YO
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37 @SOLEXA2_0414:3:1:14801:1076#0/1
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38 NTGCGATGGACCAGCTGGAAAATTGGTGTTGTCGTCGGTGCAAATTCTGTCACGTTTGTGGAAGGCGACATCAGGCTACAAGGGG
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39 +
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40 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
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41 @SOLEXA2_0414:3:1:16010:1079#0/1
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42 NAGCAATTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCG
0
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44 BKJQQVWVVV_______________WYYYY_______________V____Y[[[[________________________
0
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45 @SOLEXA2_0414:3:1:17165:1075#0/1
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46 N
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49 @SOLEXA2_0414:3:1:19504:1081#0/1
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50 NAGCAATACTTCTATCTTCCCATGTTCTTACTATAGTTTGTGTATTGCCAAGTCTGTTGTGAGCCACATAATAAGGTGTCAAAAT
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51 +
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52 BJJOJRRQQRYYYYY__b_______[[[[PWWTWWYYYYY[Y[[[YYYYUTTWVVY[YY[_______________VTTTVTVVTV
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53 @SOLEXA2_0414:3:1:19703:1080#0/1
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54 NAGCAATATTGAATTAAATATATGCCAGTGGACTACTAAAACCCAAAGTATATAA
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56 BIKOIVWVVVY[Y[YVVTVTYYYYY_W___BBBBBBBBBBBBBBBBBBBBBBBBB
0
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57 @SOLEXA2_0414:3:1:6962:1084#0/1
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58 NTGCGATCTGAATCTCCCGCAGTGTCCGGGTGGGGTCAGAAAAATGGGCAGCTCAACTGCAGGTACACGTAGTGCGACCAGTGCC
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59 +
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60 BEMEEKLQJJ__________Y[[[[XXXXXXWQQQQYYYY__QQQ___PWWWXWV_____BBBBBBBBBBBBBBBBBBBBBBBBB
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61 @SOLEXA2_0414:3:1:8715:1091#0/1
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62 NTGCGATCAACCATTCAGACACCAGCAGAAGTGTTCTGGAATCCTATGTGAGGGACATACATTCAGACCACGGCAGAAGTGTTCT
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63 +
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64 BGKEEHMKHL[[[[[_____Y[[[[_______________W_________YYYYY_______________[[Y[Y[[[Y[[[[[[
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65 @SOLEXA2_0414:3:1:12077:1083#0/1
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66 NAGCAATATGCTTTGGCCACAAAATAAGTGCACTGTGCAATATCAAGTGTTTCAGCAAGTTTTTGGAATCTCAAGCACATTTTGA
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67 +
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68 BJJJJQRPPObbb____b__b__QQQQQ_________b_____b_[[[[[______V_____________b____YY[[[b___O
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69 @SOLEXA2_0414:3:1:13392:1083#0/1
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70 NTGCGATCCGGACACTGCGGGAGATTCAGAGTAACAGTTGTAAGGTCTGGTTTGTCCTATTTGTGTTTGAATTTGGCTCTACGTG
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71 +
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72 BKJQJORQPP_______________TWTWTWWWTTYYYYY_____YYYYWYYYYYYYYYYWWWWWVVTTV______Y_______B
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73 @SOLEXA2_0414:3:1:14856:1092#0/1
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74 NTGCGATGTGTCCTTAGGACAAACCAGACCTTACAACTGTAAGCCTGGCTTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGA
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75 +
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76 BIIOHTTSTT_____[[[[YYYYYYVYYYY______________W[[[YY__________V[[[[____WXVVXX___W_XXWXV
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77 @SOLEXA2_0414:3:1:17070:1089#0/1
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78 NTGCGATCTGAATCTCCCGCAGTGTCCCACTCTTAGGTCACTTAGCATGTTCATTAGAGTACTCTGAATCTCCCGCAGTGTCCTC
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79 +
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80 BHMOGRTTTTY[[[Y__________TVVVTYVYYY____WYYYYRPRWRR[[Y[[_____WWWTWWTWWWYYYYY[R[[YYYYYY
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81 @SOLEXA2_0414:3:1:18860:1082#0/1
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82 NAGCAATACAGTTGTAAGGTCTGGTTTGTCCTCACTCAAATGTCATCTCGAATTGTAGTTCTCATAAT
0
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84 BHOKHSWTTT____________________BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
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85 @SOLEXA2_0414:3:1:18912:1089#0/1
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86 N
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88 B
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89 @SOLEXA2_0414:3:1:3923:1105#0/1
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90 NAGCAATAGTCCAGGGATACAGAACCCACTGATACAGAGGCCCAGCTGTAGTTCTATTATTGCTCAGATCGGAAGAGCGGTTCAG
0
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92 BNNNQVWVVV__bbb__b_bb____b________b__Z_______[[[[YYYYYY_____b___bb____YWWYYVVTVVYYYYY
0
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93 @SOLEXA2_0414:3:1:6494:1099#0/1
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94 N
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97 @SOLEXA2_0414:3:1:8413:1097#0/1
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98 NTGCGATCCATACCCTTCTTATATACTTTGGGTTTTAGTAGTCCACTGGCATATATTTAATTCAATACATACTCATTAAGCAATG
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99 +
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100 BGIGEMQLNQ_______________VXXXX_____WWXXX[YY[[_____WYRYY___________V___YLYYYYYYPY_____
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101 @SOLEXA2_0414:3:1:9865:1095#0/1
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102 NCTACATTAATTGTTTTAATTTTTATTTATTTATTTTTTTGAGACGGAGTCTCGCTGATGTAGCAGATCGGAAGAGCGGTTCAGC
0
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104 BKKJKRTTST_____QQQ_b[[[[[QQQQ_QQQbQQQQQQQ_________bb__________________[[[[Y__________
0
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105 @SOLEXA2_0414:3:1:10606:1102#0/1
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106 NTGCGATATTTGGAACTTCATGTGTCTTTTGTATTGCTTGATAGCAGCATAGAATATGTGAGGTATTTTTGGCTACTTTGTGAAT
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107 +
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108 BMMMMTUTTRTTVWV_____b___b__b_QQQQ__[Y[[YYYYYY_______________[[[[[YYYQQQ____BBBBBBBBBB
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109 @SOLEXA2_0414:3:1:11267:1102#0/1
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110 NCTACATTACTCTGAATCTCCCGCAGTGTCCGAGATCGCACCACTGCACCCCAGCCTGGGCGACATGTAGCA
0
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112 BEGGEJLHIK______________RTWWWWY[Y[[________________QM__YYYYYXWJVX_____BB
0
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113 @SOLEXA2_0414:3:1:13556:1104#0/1
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114 NTGCGATTTACAACCGTTACTCTGAATCTCCCGCAGTGTCCAGGACAAAC
0
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116 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
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117 @SOLEXA2_0414:3:1:13625:1097#0/1
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118 NTGCGATCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACAACTGTATCGCAAA
0
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120 BJKJJTUUST___b_b_____b______________________________bW_bb__bb____[[Y[YYYYYY
0
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121 @SOLEXA2_0414:3:1:14055:1098#0/1
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122 NAGCAATCTCTGAATCTCCCGCAGTGTCCAGGACAAACCAGACCTTACAACTGTTACTCTGAATCTCCCGCAGTGTCCAGGACAA
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123 +
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124 BMMMNWWWWWbbb________bb_______b_^__________bbb_________bb_b__b__b__b_bb____[Y[Y[VQWVV
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125 @SOLEXA2_0414:3:1:14195:1099#0/1
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126 NTGCGATCTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATATCGCAAAGATC
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127 +
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128 BPPPNVWVWV_b__bbb____bbb__bb__b_______b___bbQQ_b___bb_bb__b____b_b____b_bb___b____b__
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129 @SOLEXA2_0414:3:1:15892:1106#0/1
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130 NTGCGATAGACACATGAAGTTCCAAATTATTTTTTAACAATTTTTAAGGGAGACTGAGGCGAGAGAATCACTTGAGCCTGAGAGA
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131 +
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132 BPOQMVWVVV_bbb_bb_b_b__________QQQQQbbb_b_b___b__b__________b____Z___________b_b____Z
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133 @SOLEXA2_0414:3:1:18397:1101#0/1
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134 NTGCGATATGGTTGATTATGTTTTTCTACATATTATTTGACATACTTCTATCTTCCCATGTTCTTACTATAGTTTGTGTATTGCC
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135 +
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136 BHIKHWTRTTYYYYYXXVWWYYYQQOOOWWY[[[[__QQ_WWWTWXXXWW_______________YYYYYXXXXXWWWWWYYYYR
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137 @SOLEXA2_0414:3:1:4546:1111#0/1
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138 NCTACATCAAAAACATGCGTATGGACAAACCAGACCTTACAACTGTACTCTGAATCTCCCGCAGTGTCCTCTGCCTAGGACAAAC
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139 +
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140 BOIHKLRNMQXWWWQQ______________________________________________^_____________________Y
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141 @SOLEXA2_0414:3:1:5840:1112#0/1
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142 NTGCGATCTTAAAAATTGTTAAAAAATAATTTGGAACTTCATGTGTCTTTTGTATTGCTTGATAGCAGCATAGAATATGTGAGGT
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143 +
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144 BQKKJRQONNKRNNL__________QQQQQVVVTTSSRSSQYYYYYYYYYQQQQ______BBBBBBBBBBBBBBBBBBBBBBBBB
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145 @SOLEXA2_0414:3:1:6252:1110#0/1
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146 NTGCGATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT
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147 +
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148 BKIKHNRROR_b____b_____________________b___bbb_QQ_______________Q_YYYYY___T________W__
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149 @SOLEXA2_0414:3:1:6533:1111#0/1
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150 NCTACATGAGGGCGCTCGTTCTCCTCTAAACAAAACTTGTGGAAGGGCTCACAACAGACTTGGCAATACACAAACTATAGTAAGA
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151 +
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152 BPPPPWWVVV____bb_bbbbbb_bbb____bQQQQ_b___b_b_____bb_bb____b_bb__b_bbbbb__b___________
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153 @SOLEXA2_0414:3:1:7569:1113#0/1
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154 NAGCAATTCTAAACAAAACTTGTGGAAGGGCTCACAACAGACTTGGCAATACACAAACTATAGTAAGAACATGGGAAGATAGAAG
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156 BIKOOPTTTT_____QQQQ_YYYYYYYYYY_____YYYYY___________________________________YQYYY___Y_
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157 @SOLEXA2_0414:3:1:7605:1117#0/1
1
b0276d1141fe Fix test case
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parents: 0
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158 NAGCAATCCTTTAGTTCTAGTGTCTAGGGATATGCAAAGTCAGAAAAAAC
0
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parents:
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159 +
1
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diff changeset
160 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
0
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161 @SOLEXA2_0414:3:1:13482:1108#0/1
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162 NCTACATCTGAATCTCCCGCAGTGTCCGAGATCGCACCACTGCACCCCAGCCTGGGCGACAGCGAGACTCCGTCTCAAAAAAATA
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163 +
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164 BLLLQVWWWVbb__bb___b_____b_____bb_b____________QQ_bbb_bY____OTVVOYVYYYVVSTTWWTTWYQQQQ
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165 @SOLEXA2_0414:3:1:14990:1109#0/1
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166 NTGCGATCTGGTTTGTCCTAGGCAGAGGACACTGCGGGAGATTCAGAGTAACAGTTGTAAGGCCTGGTTTGTCCTGGACACTGCG
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167 +
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168 BIGGJNRPOOYYYYYVWXWV_____YYRPWYYYYYXWWRWYYYYYVVTVTXXVWX_________Y[Y[[[_____YYYYY_____
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169 @SOLEXA2_0414:3:1:15871:1113#0/1
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170 NTGCGATATTTTTAAGGGAGACTGAGGCGAGAGAATCACTTGAGCCTGAGAGATCATGAGGACTCTTATAGGCCATGCTAAGACG
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171 +
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172 BJJOHRTRTT[QQQ[___b____b______[V[[[bbbbb_b___b_b_____________________________________
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173 @SOLEXA2_0414:3:1:17840:1114#0/1
1
b0276d1141fe Fix test case
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parents: 0
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174 NAGCAATCTCTAGATTACTTATCATACCTAATACAATGTAAATAGTTGTTATACTGTATTGTTTAGGAAATAAT
0
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175 +
1
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176 BOIIIVWWVV_____Y[[[[[[[W[TWTWRYYYYYY[YYY____R_____BBBBBBBBBBBBBBBBBBBBBBBB
0
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177 @SOLEXA2_0414:3:1:18083:1109#0/1
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178 NAGCAATTACTCTGAATCTCCCGCAGTGTCCAATACTGTACTTTTTTACATAGTCATTGCTTAATGAATATGTATTGAATTAAAT
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179 +
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180 BBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBBB
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181 @SOLEXA2_0414:3:1:3606:1121#0/1
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182 NTGCGATGCATTAATTGTGTCTTTAAGGGTTAAACAGAGGCTCACAACAGACTTGACAATACACAAACTATAGTAAGAACATGGG
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183 +
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184 BIIKHQTTSS[[[Y[_____YYYYYTWVVV_____b___^_________________________YYYYY_____BBBBBBBBBB
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185 @SOLEXA2_0414:3:1:4029:1119#0/1
1
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parents: 0
diff changeset
186 N
0
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187 +
1
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Jim Johnson <jj@umn.edu>
parents: 0
diff changeset
188 B
0
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189 @SOLEXA2_0414:3:1:10939:1119#0/1
1
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190 NCTACATACAGTTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTATGTAGCA
0
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parents:
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191 +
1
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parents: 0
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192 BQKQLVWVWV_____[Y[[[__________BBBBBBBBBBBBBBBBBBBBBBBBBBB
0
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193 @SOLEXA2_0414:3:1:11098:1122#0/1
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194 NAGCAATGTTGAGTCCAGGGATACAGAACCCACTGATACAGAGGCCCAGCTGTAGTTCTATTACCAAGTTTTGTACCTTTGTAGC
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parents:
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195 +
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196 BEMGGQQORMVVVVTWWWWWOVTVVWRWWW_______________[[T[YTVTTV_____BBBBBBBBBBBBBBBBBBBBBBBBB
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197 @SOLEXA2_0414:3:1:12110:1126#0/1
1
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parents: 0
diff changeset
198 NTGCGATTGTAAGGTCTGGTTTGTCCTGGACACTGCGGGAGATTCAGATCGCAAAGATCGGAAGAGCGGTTCAGCAGGAATGCCG
0
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parents:
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199 +
1
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parents: 0
diff changeset
200 BIIIHQRRRQ[[[[[b__bb_b___YYYYY_____UWWWT[T[[Y__bb_________Y______YYYYYQWWWW___S_BBBBB