diff test-data/matches.txt @ 1:b0276d1141fe default tip

Fix test case

--- a/test-data/matches.txt	Mon Jan 13 14:57:53 2014 -0500
+++ b/test-data/matches.txt	Thu Jan 30 13:10:12 2014 -0600
@@ -1,64 +1,40 @@
-p(c|s): 0.999973; p(!c|s): 0.000027; adapter: solexa-reverse
-SOLEXA2_0414:3:1:12658:1069#0/1
-AGATCGGAAGAGCGGT
-|||||||||||| |||
-AGATCGGAAGAGNGGT
-_______Q__BBBBBB
-[1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00]
-
-p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse
-SOLEXA2_0414:3:1:3923:1105#0/1
-AGATCGGAAGAGCGGTTCAG
-||||||||||||||||||||
-AGATCGGAAGAGCGGTTCAG
-b____YWWYYVVTVVYYYYY
-[1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00]
+p(c|s): 0.581352; p(!c|s): 0.418648; adapter: Multiplexing_adapter_2
+SOLEXA2_0414:3:1:17191:1069#0/1
+CACTCTTTCC
+|||   ||  
+CACAAGTTTT
+BBBBBBBBBB
+[0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61]
 
-p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse
-SOLEXA2_0414:3:1:9865:1095#0/1
-AGATCGGAAGAGCGGTTCAGC
-|||||||||||||||||||||
-AGATCGGAAGAGCGGTTCAGC
-______[[[[Y__________
-[1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00]
-
-p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-forward
-SOLEXA2_0414:3:1:11267:1102#0/1
-AGATCGGAAGAGCG
-||||||||||||||
-AGATCGGAAGAGCG
-BBBBBBBBBBBBBB
-[1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00]
+p(c|s): 0.534091; p(!c|s): 0.465909; adapter: Multiplexing_adapter_1
+SOLEXA2_0414:3:1:19703:1080#0/1
+GATCGGAAGAGCACA
+||  || |  |   |
+GAAGGGTATGGTTGA
+BBBBBBBBBBBBBBB
+[0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61]
 
-p(c|s): 0.999999; p(!c|s): 0.000001; adapter: solexa-forward
-SOLEXA2_0414:3:1:13556:1104#0/1
-AGATCGGAAGAG
-||||||||||||
-AGATCGGAAGAG
-BBBBBBBBBBBB
-[1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00]
-
-p(c|s): 0.999995; p(!c|s): 0.000005; adapter: solexa-forward
-SOLEXA2_0414:3:1:13625:1097#0/1
-AGATCGGAAGA
-|||||||||||
-AGATCGGAAGA
-Y____BBBBBB
-[1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00]
+p(c|s): 0.581352; p(!c|s): 0.418648; adapter: Multiplexing_adapter_1
+SOLEXA2_0414:3:1:18860:1082#0/1
+GATCGGAAGA
+|  || | | 
+GGCCGCATGT
+BBBBBBBBBB
+[0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61]
 
-p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse
-SOLEXA2_0414:3:1:10939:1119#0/1
-AGATCGGAAGAGCGGTTCAGCAGGAATGC
-||||||| |||||||||||||||||| ||
-AGATCGGGAGAGCGGTTCAGCAGGAAGGC
-BBBBBBBBBBBBBBBBBBBBBBBBBBBBB
-[1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00]
+p(c|s): 0.729153; p(!c|s): 0.270847; adapter: Multiplexing_adapter_2
+SOLEXA2_0414:3:1:13556:1104#0/1
+CACTCTTTC
+||  | || 
+CAGACCTTA
+BBBBBBBBB
+[0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61]
 
-p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse
-SOLEXA2_0414:3:1:12110:1126#0/1
-AGATCGGAAGAGCGGTTCAGCAGGAATGCCG
-|||||||||||||||||||||||||||||||
-AGATCGGAAGAGCGGTTCAGCAGGAATGCCG
-____Y______YYYYYQWWWW___S_BBBBB
-[1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00]
+p(c|s): 0.745940; p(!c|s): 0.254060; adapter: Multiplexing_adapter_2
+SOLEXA2_0414:3:1:7605:1117#0/1
+CACTCTTTCCCTACACGACGCTC
+|| ||    || | | ||   | 
+CAGTCACCACCCAAAAGAAAATA
+BBBBBBBBBBBBBBBBBBBBBBB
+[0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61]