Mercurial > repos > jjohnson > scythe
comparison test-data/matches.txt @ 1:b0276d1141fe default tip
Fix test case
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Thu, 30 Jan 2014 13:10:12 -0600 |
parents | 08439b004404 |
children |
comparison
equal
deleted
inserted
replaced
0:08439b004404 | 1:b0276d1141fe |
---|---|
1 p(c|s): 0.999973; p(!c|s): 0.000027; adapter: solexa-reverse | 1 p(c|s): 0.581352; p(!c|s): 0.418648; adapter: Multiplexing_adapter_2 |
2 SOLEXA2_0414:3:1:12658:1069#0/1 | 2 SOLEXA2_0414:3:1:17191:1069#0/1 |
3 AGATCGGAAGAGCGGT | 3 CACTCTTTCC |
4 |||||||||||| ||| | 4 ||| || |
5 AGATCGGAAGAGNGGT | 5 CACAAGTTTT |
6 _______Q__BBBBBB | 6 BBBBBBBBBB |
7 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] | 7 [0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61] |
8 | 8 |
9 p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse | 9 p(c|s): 0.534091; p(!c|s): 0.465909; adapter: Multiplexing_adapter_1 |
10 SOLEXA2_0414:3:1:3923:1105#0/1 | 10 SOLEXA2_0414:3:1:19703:1080#0/1 |
11 AGATCGGAAGAGCGGTTCAG | 11 GATCGGAAGAGCACA |
12 |||||||||||||||||||| | 12 || || | | | |
13 AGATCGGAAGAGCGGTTCAG | 13 GAAGGGTATGGTTGA |
14 b____YWWYYVVTVVYYYYY | 14 BBBBBBBBBBBBBBB |
15 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] | 15 [0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61] |
16 | 16 |
17 p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse | 17 p(c|s): 0.581352; p(!c|s): 0.418648; adapter: Multiplexing_adapter_1 |
18 SOLEXA2_0414:3:1:9865:1095#0/1 | 18 SOLEXA2_0414:3:1:18860:1082#0/1 |
19 AGATCGGAAGAGCGGTTCAGC | 19 GATCGGAAGA |
20 ||||||||||||||||||||| | 20 | || | | |
21 AGATCGGAAGAGCGGTTCAGC | 21 GGCCGCATGT |
22 ______[[[[Y__________ | 22 BBBBBBBBBB |
23 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] | 23 [0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61] |
24 | 24 |
25 p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-forward | 25 p(c|s): 0.729153; p(!c|s): 0.270847; adapter: Multiplexing_adapter_2 |
26 SOLEXA2_0414:3:1:11267:1102#0/1 | 26 SOLEXA2_0414:3:1:13556:1104#0/1 |
27 AGATCGGAAGAGCG | 27 CACTCTTTC |
28 |||||||||||||| | 28 || | || |
29 AGATCGGAAGAGCG | 29 CAGACCTTA |
30 BBBBBBBBBBBBBB | 30 BBBBBBBBB |
31 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] | 31 [0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61] |
32 | 32 |
33 p(c|s): 0.999999; p(!c|s): 0.000001; adapter: solexa-forward | 33 p(c|s): 0.745940; p(!c|s): 0.254060; adapter: Multiplexing_adapter_2 |
34 SOLEXA2_0414:3:1:13556:1104#0/1 | 34 SOLEXA2_0414:3:1:7605:1117#0/1 |
35 AGATCGGAAGAG | 35 CACTCTTTCCCTACACGACGCTC |
36 |||||||||||| | 36 || || || | | || | |
37 AGATCGGAAGAG | 37 CAGTCACCACCCAAAAGAAAATA |
38 BBBBBBBBBBBB | 38 BBBBBBBBBBBBBBBBBBBBBBB |
39 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] | 39 [0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61, 0.61] |
40 | 40 |
41 p(c|s): 0.999995; p(!c|s): 0.000005; adapter: solexa-forward | |
42 SOLEXA2_0414:3:1:13625:1097#0/1 | |
43 AGATCGGAAGA | |
44 ||||||||||| | |
45 AGATCGGAAGA | |
46 Y____BBBBBB | |
47 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] | |
48 | |
49 p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse | |
50 SOLEXA2_0414:3:1:10939:1119#0/1 | |
51 AGATCGGAAGAGCGGTTCAGCAGGAATGC | |
52 ||||||| |||||||||||||||||| || | |
53 AGATCGGGAGAGCGGTTCAGCAGGAAGGC | |
54 BBBBBBBBBBBBBBBBBBBBBBBBBBBBB | |
55 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] | |
56 | |
57 p(c|s): 1.000000; p(!c|s): 0.000000; adapter: solexa-reverse | |
58 SOLEXA2_0414:3:1:12110:1126#0/1 | |
59 AGATCGGAAGAGCGGTTCAGCAGGAATGCCG | |
60 ||||||||||||||||||||||||||||||| | |
61 AGATCGGAAGAGCGGTTCAGCAGGAATGCCG | |
62 ____Y______YYYYYQWWWW___S_BBBBB | |
63 [1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00, 1.00] | |
64 |