Mercurial > repos > jjohnson > package_rsem_1_1_17

changeset 1:7d060ea51c6f default tip

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RSEM needs samtools in relative path to install
author Jim Johnson <jj@umn.edu>
date Thu, 05 Dec 2013 08:39:51 -0600
parents 9fa1826ae6d4
children
files tool_dependencies.xml
diffstat 1 files changed, 5 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Nov 11 13:11:36 2013 -0500
+++ b/tool_dependencies.xml	Thu Dec 05 08:39:51 2013 -0600
@@ -5,7 +5,11 @@
             <actions>
                 <action type="download_by_url">http://deweylab.biostat.wisc.edu/rsem/src/rsem-1.1.17.tar.gz</action>
                 <action type="shell_command">make</action>
-
+                <action type="make_directory">$INSTALL_DIR/bin/sam</action> 
+                <action type="move_file">
+                    <source>sam/samtools</source>
+                    <destination>$INSTALL_DIR/bin/sam</destination>
+                </action>
                 <action type="move_file">
                     <source>convert-sam-for-rsem</source>
                     <destination>$INSTALL_DIR/bin</destination>