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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="hisat" version="0.1.0-beta">
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4 <install version="1.0">
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5 <actions_group>
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6 <actions architecture="x86_64" os="linux">
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7 <action type="download_by_url">http://ccb.jhu.edu/software/hisat/downloads/hisat-0.1.0-beta-Linux_x86_64.zip</action>
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8 <action type="move_file">
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9 <source>hisat</source>
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10 <destination>$INSTALL_DIR/bin</destination>
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11 </action>
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12 <action type="move_file">
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13 <source>hisat-align</source>
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14 <destination>$INSTALL_DIR/bin</destination>
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15 </action>
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16 <action type="move_file">
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17 <source>hisat-build</source>
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18 <destination>$INSTALL_DIR/bin</destination>
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19 </action>
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20 <action type="move_file">
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21 <source>hisat-inspect</source>
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22 <destination>$INSTALL_DIR/bin</destination>
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23 </action>
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24 </actions>
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25 <actions architecture="x86_64" os="darwin">
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26 <action type="download_by_url">http://ccb.jhu.edu/software/hisat/downloads/hisat-0.1.0-beta-OSX_x86_64.zip</action>
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27 <action type="move_file">
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28 <source>hisat</source>
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29 <destination>$INSTALL_DIR/bin</destination>
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30 </action>
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31 <action type="move_file">
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32 <source>hisat-align</source>
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33 <destination>$INSTALL_DIR/bin</destination>
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34 </action>
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35 <action type="move_file">
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36 <source>hisat-build</source>
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37 <destination>$INSTALL_DIR/bin</destination>
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38 </action>
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39 <action type="move_file">
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40 <source>hisat-inspect</source>
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41 <destination>$INSTALL_DIR/bin</destination>
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42 </action>
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43 </actions>
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44 <actions>
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45 <action type="download_by_url">http://ccb.jhu.edu/software/hisat/downloads/hisat-0.1.0-beta-source.zip</action>
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46 <action type="shell_command">make</action>
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47 <action type="move_file">
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48 <source>hisat</source>
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49 <destination>$INSTALL_DIR/bin</destination>
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50 </action>
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51 <action type="move_file">
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52 <source>hisat-align</source>
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53 <destination>$INSTALL_DIR/bin</destination>
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54 </action>
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55 <action type="move_file">
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56 <source>hisat-build</source>
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57 <destination>$INSTALL_DIR/bin</destination>
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58 </action>
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59 <action type="move_file">
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60 <source>hisat-inspect</source>
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61 <destination>$INSTALL_DIR/bin</destination>
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62 </action>
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63 </actions>
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64 </actions_group>
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65 <actions>
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66 <action type="chmod">
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67 <file mode="750">$INSTALL_DIR/bin/hisat</file>
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68 </action>
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69 <action type="chmod">
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70 <file mode="750">$INSTALL_DIR/bin/hisat-align</file>
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71 </action>
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72 <action type="chmod">
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73 <file mode="750">$INSTALL_DIR/bin/hisat-build</file>
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74 </action>
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75 <action type="chmod">
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76 <file mode="750">$INSTALL_DIR/bin/hisat-inspect</file>
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77 </action>
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78 <action type="set_environment">
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79 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
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80 </action>
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81 </actions>
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82 </install>
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83 <readme />
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84 </package>
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85 </tool_dependency>
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