Mercurial > repos > jjohnson > package_hisat_0_1_0_beta

diff tool_dependencies.xml @ 0:53ed3caf1d9d

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author jjohnson
date Tue, 22 Jul 2014 08:45:16 -0400
parents
children 9dc3a38a440e
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Jul 22 08:45:16 2014 -0400
@@ -0,0 +1,85 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="hisat" version="0.1.0-beta">
+        <install version="1.0">
+            <actions_group>
+                <actions architecture="x86_64" os="linux">
+                    <action type="download_by_url">http://ccb.jhu.edu/software/hisat/downloads/hisat-0.1.0-beta-Linux_x86_64.zip</action>
+                    <action type="move_file">
+                        <source>hisat</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>hisat-align</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>hisat-build</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>hisat-inspect</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                </actions>
+                <actions architecture="x86_64" os="darwin">
+                    <action type="download_by_url">http://ccb.jhu.edu/software/hisat/downloads/hisat-0.1.0-beta-OSX_x86_64.zip</action>
+                    <action type="move_file">
+                        <source>hisat</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>hisat-align</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>hisat-build</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>hisat-inspect</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                </actions>
+                <actions>
+                    <action type="download_by_url">http://ccb.jhu.edu/software/hisat/downloads/hisat-0.1.0-beta-source.zip</action>
+                    <action type="shell_command">make</action>
+                    <action type="move_file">
+                        <source>hisat</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>hisat-align</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>hisat-build</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                    <action type="move_file">
+                        <source>hisat-inspect</source>
+                        <destination>$INSTALL_DIR/bin</destination>
+                    </action>
+                </actions>
+            </actions_group>
+            <actions>
+                <action type="chmod">
+                    <file mode="750">$INSTALL_DIR/bin/hisat</file>
+                </action>
+                <action type="chmod">
+                    <file mode="750">$INSTALL_DIR/bin/hisat-align</file>
+                </action>
+                <action type="chmod">
+                    <file mode="750">$INSTALL_DIR/bin/hisat-build</file>
+                </action>
+                <action type="chmod">
+                    <file mode="750">$INSTALL_DIR/bin/hisat-inspect</file>
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme />
+    </package>
+</tool_dependency>