Mercurial > repos > jjohnson > package_bioc_seqlogo_1_24_0

changeset 0:2c9adf14664d draft default tip

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Imported from capsule None
author jjohnson
date Tue, 14 Oct 2014 10:06:44 -0400
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 24 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Oct 14 10:06:44 2014 -0400
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="R" version="2.15.0">
+      <repository changeset_revision="3a70cdc41d21" name="package_r_2_15_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bioc_seqlogo" version="1.24.0">
+      <install version="1.0">
+          <actions>
+              <action type="download_file">http://bioconductor.org/packages/2.11/bioc/src/contrib/seqLogo_1.24.0.tar.gz</action>
+                <action type="set_environment_for_install">
+                  <repository changeset_revision="3a70cdc41d21" name="package_r_2_15_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                      <package name="R" version="2.15.0" />
+                    </repository>
+                </action>
+                <action type="shell_command">Rscript -e "install.packages(c('seqLogo_1.24.0.tar.gz'),lib='$INSTALL_DIR', repos=NULL, dependencies=FALSE)"</action>
+                <action type="set_environment">
+                  <environment_variable action="prepend_to" name="R_LIBS_USER">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>