Mercurial > repos > jjohnson > optitype
changeset 2:61fc10014a9e draft
Uploaded
| author | jjohnson |
|---|---|
| date | Mon, 23 Nov 2015 09:00:07 -0500 |
| parents | bd817c1fdd63 |
| children | 4f78281c42ff |
| files | optitype.xml tool_dependencies.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/optitype.xml Wed Sep 23 15:35:45 2015 -0400 +++ b/optitype.xml Mon Nov 23 09:00:07 2015 -0500 @@ -29,10 +29,10 @@ #set $input_fq = ' '.join($fastqs) && python \$OPTITYPE_DIR/OptiTypePipeline.py $read_type --input ${' '.join($fastqs)} -#if $beta != None: +#if str($beta) != '': --beta $beta #end if -#if $enumerate != None: +#if str($enumerations) != '': --enumerate $enumerations #end if --outdir $outdir @@ -63,7 +63,7 @@ <option value="--dna">DNA</option> </param> <param name="beta" type="float" value="" min="0.0" max="0.1" optional="true" label="homozygosity beta" help="The beta value for for homozygosity detection"/> - <param name="enumerations" type="integer" value="" min="1" max="5" optional="true" label="Enunerations" help="The number of enumerations"/> + <param name="enumerations" type="integer" value="" min="1" max="5" optional="true" label="Enumerations" help="The number of enumerations"/> <param name="outdir" type="hidden" value="output_dir"/> </inputs> <outputs>
--- a/tool_dependencies.xml Wed Sep 23 15:35:45 2015 -0400 +++ b/tool_dependencies.xml Mon Nov 23 09:00:07 2015 -0500 @@ -1,7 +1,7 @@ <?xml version="1.0"?> <tool_dependency> <package name="hdf5" version="1.8.12"> - <repository changeset_revision="3412ecd1792d" name="package_hdf5_1_8_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> + <repository changeset_revision="b6d5355e3754" name="package_hdf5_1_8_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <package name="razers3" version="3.4.0"> <repository changeset_revision="98fbcf8559a9" name="package_razers3_3_4_0" owner="jjohnson" toolshed="https://testtoolshed.g2.bx.psu.edu" />