# HG changeset patch
# User jjohnson
# Date 1448287207 18000
# Node ID 61fc10014a9e62fa546c5fcb97f5345415ea7c68
# Parent  bd817c1fdd6370f588a4cc38fa8b779d165d5033
Uploaded

diff -r bd817c1fdd63 -r 61fc10014a9e optitype.xml
--- a/optitype.xml	Wed Sep 23 15:35:45 2015 -0400
+++ b/optitype.xml	Mon Nov 23 09:00:07 2015 -0500
@@ -29,10 +29,10 @@
 #set $input_fq = ' '.join($fastqs)
 && python  \$OPTITYPE_DIR/OptiTypePipeline.py 
 $read_type --input  ${' '.join($fastqs)}
-#if $beta != None: 
+#if str($beta) != '': 
  --beta $beta
 #end if
-#if $enumerate != None: 
+#if str($enumerations) != '': 
  --enumerate $enumerations
 #end if
 --outdir $outdir
@@ -63,7 +63,7 @@
       <option value="--dna">DNA</option>
     </param>
     <param name="beta" type="float" value="" min="0.0" max="0.1" optional="true" label="homozygosity beta" help="The beta value for for homozygosity detection"/>
-    <param name="enumerations" type="integer" value="" min="1" max="5" optional="true" label="Enunerations" help="The number of enumerations"/>
+    <param name="enumerations" type="integer" value="" min="1" max="5" optional="true" label="Enumerations" help="The number of enumerations"/>
     <param name="outdir" type="hidden" value="output_dir"/>
   </inputs>
   <outputs>
diff -r bd817c1fdd63 -r 61fc10014a9e tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Sep 23 15:35:45 2015 -0400
+++ b/tool_dependencies.xml	Mon Nov 23 09:00:07 2015 -0500
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="hdf5" version="1.8.12">
-            <repository changeset_revision="3412ecd1792d" name="package_hdf5_1_8_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+            <repository changeset_revision="b6d5355e3754" name="package_hdf5_1_8_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="razers3" version="3.4.0">
             <repository changeset_revision="98fbcf8559a9" name="package_razers3_3_4_0" owner="jjohnson" toolshed="https://testtoolshed.g2.bx.psu.edu" />