Mercurial > repos > jjohnson > mothur_toolsuite

annotate mothur/tools/suite_config.xml @ 1:c7923b34dea4

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
author jjohnson
date Tue, 07 Jun 2011 17:01:07 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
1 <tool id="mothur_align_check" name="Align.check" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
2 <description>Calculate the number of potentially misaligned bases</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
3 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
4 <tool id="mothur_align_seqs" name="Align.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
5 <description>Align sequences to a template alignment</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
6 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
7 <tool id="mothur_bin_seqs" name="Bin.seqs" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
8 <description>Order Sequences by OTU</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
9 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
10 <tool id="mothur_bootstrap_shared" name="Bootstrap.shared" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
11 <description>Generate a newick trees for dissimilarity among groups</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
12 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
13 <tool id="mothur_chimera_bellerophon" name="Chimera.bellerophon" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
14 <description>Find putative chimeras using bellerophon</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
15 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
16 <tool id="mothur_chimera_ccode" name="Chimera.ccode" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
17 <description>Find putative chimeras using ccode</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
18 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
19 <tool id="mothur_chimera_check" name="Chimera.check" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
20 <description>Find putative chimeras using chimeraCheck</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
21 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
22 <tool id="mothur_chimera_pintail" name="Chimera.pintail" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
23 <description>Find putative chimeras using pintail</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
24 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
25 <tool id="mothur_chimera_slayer" name="Chimera.slayer" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
26 <description>Find putative chimeras using slayer</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
27 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
28 <tool id="mothur_chop_seqs" name="Chop.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
29 <description>Trim sequences to a specified length</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
30 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
31 <tool id="mothur_classify_otu" name="Classify.otu" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
32 <description>Assign sequences to taxonomy</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
33 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
34 <tool id="mothur_classify_seqs" name="Classify.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
35 <description>Assign sequences to taxonomy</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
36 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
37 <tool id="mothur_clearcut" name="Clearcut" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
38 <description>Generate a tree using relaxed neighbor joining</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
39 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
40 <tool id="mothur_cluster_classic" name="Cluster.classic" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
41 <description>Assign sequences to OTUs (Dotur implementation)</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
42 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
43 <tool id="mothur_cluster_fragments" name="Cluster.fragments" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
44 <description> Group sequences that are part of a larger sequence</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
45 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
46 <tool id="mothur_cluster_split" name="Cluster.split" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
47 <description>Assign sequences to OTUs (Operational Taxonomic Unit) splits large matrices</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
48 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
49 <tool id="mothur_cluster" name="Cluster" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
50 <description>Assign sequences to OTUs (Operational Taxonomic Unit)</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
51 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
52 <tool id="mothur_collect_shared" name="Collect.shared" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
53 <description>Generate collector's curves for calculators on OTUs</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
54 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
55 <tool id="mothur_collect_single" name="Collect.single" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
56 <description>Summary of calculator values for OTUs</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
57 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
58 <tool id="mothur_consensus_seqs" name="Consensus.seqs" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
59 <description>Find a consensus sequence for each OTU or phylotype</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
60 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
61 <tool id="mothur_corr_axes" name="Corr.axes" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
62 <description>correlation of data to axes</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
63 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
64 <tool id="mothur_degap_seqs" name="Degap.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
65 <description>Remove gap characters from sequences</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
66 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
67 <tool id="mothur_deunique_seqs" name="Deunique.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
68 <description>Return all sequences</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
69 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
70 <tool id="mothur_dist_seqs" name="Dist.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
71 <description>calculate uncorrected pairwise distances between aligned sequences</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
72 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
73 <tool id="mothur_dist_shared" name="Dist.shared" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
74 <description>Generate a phylip-formatted dissimilarity distance matrix among multiple groups</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
75 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
76 <tool id="mothur_fastq_info" name="Fastq.info" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
77 <description>Convert fastq to fasta and quality</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
78 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
79 <tool id="mothur_filter_seqs" name="Filter.seqs" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
80 <description>removes columns from alignments</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
81 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
82 <tool id="mothur_get_groups" name="Get.groups" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
83 <description>Select groups</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
84 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
85 <tool id="mothur_get_group" name="Get.group" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
86 <description>group names from shared or from list and group</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
87 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
88 <tool id="mothur_get_lineage" name="Get.lineage" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
89 <description>Picks by taxon</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
90 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
91 <tool id="mothur_get_oturep" name="Get.oturep" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
92 <description>Generate a fasta with a representative sequence for each OTU</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
93 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
94 <tool id="mothur_get_otus" name="Get.otus" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
95 <description>Get otus containing sequences from specified groups</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
96 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
97 <tool id="mothur_get_relabund" name="Get.relabund" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
98 <description>Calculate the relative abundance of each otu</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
99 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
100 <tool id="mothur_get_seqs" name="Get.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
101 <description>Picks sequences by name</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
102 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
103 <tool id="mothur_hcluster" name="Hcluster" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
104 <description>Assign sequences to OTUs (Operational Taxonomic Unit)</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
105 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
106 <tool id="mothur_heatmap_bin" name="Heatmap.bin" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
107 <description>Generate a heatmap for OTUs</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
108 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
109 <tool id="mothur_heatmap_sim" name="Heatmap.sim" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
110 <description>Generate a heatmap for pariwise similarity</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
111 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
112 <tool id="mothur_indicator" name="Indicator" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
113 <description>Identify indicator "species" for nodes on a tree</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
114 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
115 <tool id="mothur_libshuff" name="Libshuff" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
116 <description>Cramer-von Mises tests communities for the same structure</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
117 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
118 <tool id="mothur_list_seqs" name="List.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
119 <description>Lists the names of the sequences</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
120 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
121 <tool id="mothur_make_design" name="Make Design" version="1.16.0" >
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
122 <description>Assign groups to Sets</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
123 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
124 <tool id="mothur_make_files" name="Make.group" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
125 <description>Make a group file</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
126 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
127 <tool id="mothur_merge_files" name="Merge.files" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
128 <description>Merge data</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
129 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
130 <tool id="mothur_merge_groups" name="Merge.groups" version="1.16.0" >
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
131 <description>Merge groups in a shared file</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
132 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
133 <tool id="mothur_metastats" name="Metastats" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
134 <description>generate principle components plot data</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
135 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
136 <tool id="mothur_nmds" name="Nmds" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
137 <description>generate non-metric multidimensional scaling data</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
138 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
139 <tool id="mothur_normalize_shared" name="Normalize.shared" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
140 <description>Normalize the number of sequences per group to a specified level</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
141 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
142 <tool id="mothur_pairwise_seqs" name="Pairwise.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
143 <description>calculate uncorrected pairwise distances between sequences</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
144 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
145 <tool id="mothur_parse_list" name="Parse.list" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
146 <description>Order Sequences by OTU</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
147 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
148 <tool id="mothur_parsimony" name="Parsimony" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
149 <description>Describes whether two or more communities have the same structure</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
150 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
151 <tool id="mothur_pca" name="Pca" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
152 <description>generate principle components plot data</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
153 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
154 <tool id="mothur_pcoa" name="Pcoa" version="1.16.0" >
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
155 <description>Principal Coordinate Analysis</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
156 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
157 <tool id="mothur_phylo_diversity" name="Phylo.diversity" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
158 <description>Alpha Diversity calculate unique branch length</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
159 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
160 <tool id="mothur_phylotype" name="Phylotype" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
161 <description>Assign sequences to OTUs based on taxonomy</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
162 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
163 <tool id="mothur_pre_cluster" name="Pre.cluster" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
164 <description>Remove sequences due to pyrosequencing errors</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
165 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
166 <tool id="mothur_rarefaction_shared" name="Rarefaction.shared" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
167 <description>Generate inter-sample rarefaction curves for OTUs</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
168 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
169 <tool id="mothur_rarefaction_single" name="Rarefaction.single" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
170 <description>Generate intra-sample rarefaction curves for OTUs</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
171 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
172 <tool id="mothur_read_otu" name="Read.otu" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
173 <description>Read OTU list and group to create a shared file</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
174 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
175 <tool id="mothur_remove_groups" name="Remove.groups" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
176 <description>Remove groups</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
177 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
178 <tool id="mothur_remove_lineage" name="Remove.lineage" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
179 <description>Picks by taxon</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
180 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
181 <tool id="mothur_remove_otus" name="Remove.otus" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
182 <description>Remove otus containing sequences from specified groups</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
183 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
184 <tool id="mothur_remove_rare" name="Remove.rare" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
185 <description>Remove rare OTUs</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
186 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
187 <tool id="mothur_remove_seqs" name="Remove.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
188 <description>Remove sequences by name</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
189 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
190 <tool id="mothur_reverse_seqs" name="Reverse.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
191 <description>Reverse complement the sequences</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
192 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
193 <tool id="mothur_screen_seqs" name="Screen.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
194 <description>Screen sequences</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
195 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
196 <tool id="mothur_sffinfo" name="Sffinfo" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
197 <description>Summarize the quality of sequences</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
198 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
199 <tool id="mothur_split_abund" name="Split.abund" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
200 <description>Separate sequences into rare and abundant groups</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
201 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
202 <tool id="mothur_split_groups" name="Split.groups" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
203 <description>Generates a fasta file for each group</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
204 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
205 <tool id="mothur_sub_sample" name="Sub.sample" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
206 <description>Create a sub sample</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
207 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
208 <tool id="mothur_summary_seqs" name="Summary.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
209 <description>Summarize the quality of sequences</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
210 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
211 <tool id="mothur_summary_shared" name="Summary.shared" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
212 <description>Summary of calculator values for OTUs</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
213 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
214 <tool id="mothur_summary_single" name="Summary.single" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
215 <description>Summary of calculator values for OTUs</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
216 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
217 <tool id="mothur_tree_shared" name="Tree.shared" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
218 <description>Generate a newick tree for dissimilarity among groups</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
219 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
220 <tool id="tree_vector" name="TreeVector" version="1.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
221 <description>Draw a Phylogenic Tree</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
222 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
223 <tool id="mothur_trim_seqs" name="Trim.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
224 <description>Trim sequences - primers, barcodes, quality</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
225 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
226 <tool id="mothur_unifrac_unweighted" name="unifrac.unweighted" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
227 <description>Describes whether two or more communities have the same structure</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
228 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
229 <tool id="mothur_unifrac_weighted" name="unifrac.weighted" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
230 <description>Describes whether two or more communities have the same structure</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
231 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
232 <tool id="mothur_unique_seqs" name="Unique.seqs" version="1.16.0">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
233 <description>Return unique sequences</description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
234 </tool>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
235 <tool id="mothur_venn" name="Venn" version="1.16.0" force_history_refresh="True">
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
236 <description>Generate Venn diagrams gor groups </description>
c7923b34dea4 Migrated tool version 1.16.0 from old tool shed archive to new tool shed repository
jjohnson
parents:
diff changeset
237 </tool>