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annotate mothur/tool-data/mothur_taxonomy.loc.sample @ 11:2ab2418616af draft

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tool_dependencies.xml - now working, added chmod for uchime_src/mk, and changed move_file
author Jim Johnson <jj@umn.edu>
date Fri, 30 Nov 2012 10:51:36 -0600
parents 6b358d0f17b4
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1 #This is a sample file distributed with Galaxy that enables tools
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2 #to use a directory of metagenomics files.
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3 #file has this format (white space characters are TAB characters):
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4 #
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5 # Silva reference files: http://www.mothur.org/wiki/Silva_reference_files
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6 #
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7 #<taxonomyname> <file_base>
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8 #
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9 #archaea.gg /project/db/galaxy/mothur/Silva.archaea/silva.archaea.gg.tax
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10 #archaea.silva /project/db/galaxy/mothur/Silva.archaea/silva.archaea.silva.tax
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11 #archaea.rdp /project/db/galaxy/mothur/Silva.archaea/silva.archaea.rdp.tax
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12 #archaea.ncbi /project/db/galaxy/mothur/Silva.archaea/silva.archaea.ncbi.tax
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13 #bacteria.gg /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.gg.tax
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14 #bacteria.silva /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.silva.tax
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15 #bacteria.ncbi /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.ncbi.tax
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16 #bacteria.rdp /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp.tax
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17 #bacteria.rdp6 /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp6.tax
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18 #eukarya.silva /project/db/galaxy/mothur/silva.eukarya.silva.tax
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19 #eukarya.ncbi /project/db/galaxy/mothur/silva.eukarya.ncbi.tax
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20 #trainset6_032010.rdp.tax /project/db/galaxy/mothur/RDP/trainset6_032010.rdp.tax
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21 #trainset7_112011.pds.tax /project/db/galaxy/mothur/RDP/trainset7_112011.pds.tax
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22 #trainset7_112011.rdp.tax /project/db/galaxy/mothur/RDP/trainset7_112011.rdp.tax
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23 #FungiLSU_train_1400bp_8506_mod.tax /project/db/galaxy/mothur/RDP/FungiLSU_train_1400bp_8506_mod.tax
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24 #