Mercurial > repos > jjohnson > krona_tools
changeset 5:f9fc927e56c3 draft
xml escapes in tool_dependencies.xml
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 30 Oct 2012 12:25:52 -0500 |
| parents | 10132903b38b |
| children | c74f1ea02e29 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Oct 30 09:33:14 2012 -0500 +++ b/tool_dependencies.xml Tue Oct 30 12:25:52 2012 -0500 @@ -11,12 +11,12 @@ <!-- Downloaded NCBI taxonomy will be over 1.8GB after processing, Instead of $INSTALL_DIR/ maybe should be in a galaxy data dir --> <!-- The KronaTools tar includes an empty taxonomy dir <action type="make_directory">$INSTALL_DIR/taxonomy</action> - <action type="shell_command">cd $INSTALL_DIR && perl install.pl --prefix $INSTALL_DIR --taxonomy $INSTALL_DIR/taxonomy</action> + <action type="shell_command">cd $INSTALL_DIR && perl install.pl --prefix $INSTALL_DIR --taxonomy $INSTALL_DIR/taxonomy</action> --> <!-- With prefix arg "$INSTALL_DIR" installs code into: $INSTALL_DIR/bin/ --> - <action type="shell_command">cd $INSTALL_DIR && perl install.pl --prefix $INSTALL_DIR</action> + <action type="shell_command">cd $INSTALL_DIR && perl install.pl --prefix $INSTALL_DIR</action> <!-- Down load and process NCBI Taxonomy data, the updateTaxonomy.sh script relies on the curl command --> - <action type="shell_command">cd $INSTALL_DIR && if curl --help 2>i1 > /dev/null; then ./updateTaxonomy.sh; fi</action> + <action type="shell_command">cd $INSTALL_DIR && if curl --help 2>i1 > /dev/null; then ./updateTaxonomy.sh; fi</action> <!-- copy javascript to galaxy/static/krona/ <action type="shell_command">./deployResources.sh /static/krona</action> -->