# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1351617952 18000
# Node ID f9fc927e56c33015126ff02fb172703a3677e5e5
# Parent  10132903b38b1faf8c854be653a49fda170f7536
xml escapes in tool_dependencies.xml

diff -r 10132903b38b -r f9fc927e56c3 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Oct 30 09:33:14 2012 -0500
+++ b/tool_dependencies.xml	Tue Oct 30 12:25:52 2012 -0500
@@ -11,12 +11,12 @@
                 <!-- Downloaded NCBI taxonomy will be over 1.8GB after processing,  Instead of $INSTALL_DIR/  maybe should be in a galaxy data dir -->
                 <!--  The KronaTools tar includes an empty taxonomy dir
                 <action type="make_directory">$INSTALL_DIR/taxonomy</action>
-                <action type="shell_command">cd $INSTALL_DIR && perl install.pl --prefix $INSTALL_DIR --taxonomy $INSTALL_DIR/taxonomy</action>
+                <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl --prefix $INSTALL_DIR --taxonomy $INSTALL_DIR/taxonomy</action>
                 -->
                 <!-- With prefix arg "$INSTALL_DIR" installs code into: $INSTALL_DIR/bin/ -->
-                <action type="shell_command">cd $INSTALL_DIR && perl install.pl --prefix $INSTALL_DIR</action>
+                <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl --prefix $INSTALL_DIR</action>
                 <!-- Down load and process NCBI Taxonomy data, the  updateTaxonomy.sh script relies on the curl command -->
-                <action type="shell_command">cd $INSTALL_DIR && if curl --help 2>i1 > /dev/null; then ./updateTaxonomy.sh; fi</action>
+                <action type="shell_command">cd $INSTALL_DIR &amp;&amp; if curl --help 2>i1 > /dev/null; then ./updateTaxonomy.sh; fi</action>
                 <!-- copy javascript to galaxy/static/krona/ 
                 <action type="shell_command">./deployResources.sh /static/krona</action>
                 -->