Mercurial > repos > jjohnson > krona_tools
changeset 6:c74f1ea02e29 draft
xml escapes in tool_dependencies.xml
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Tue, 30 Oct 2012 12:34:46 -0500 |
| parents | f9fc927e56c3 |
| children | de6dceb65136 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/tool_dependencies.xml Tue Oct 30 12:25:52 2012 -0500 +++ b/tool_dependencies.xml Tue Oct 30 12:34:46 2012 -0500 @@ -11,7 +11,7 @@ <!-- Downloaded NCBI taxonomy will be over 1.8GB after processing, Instead of $INSTALL_DIR/ maybe should be in a galaxy data dir --> <!-- The KronaTools tar includes an empty taxonomy dir <action type="make_directory">$INSTALL_DIR/taxonomy</action> - <action type="shell_command">cd $INSTALL_DIR && perl install.pl --prefix $INSTALL_DIR --taxonomy $INSTALL_DIR/taxonomy</action> + <action type="shell_command">cd $INSTALL_DIR && perl install.pl \-\-prefix $INSTALL_DIR \-\-taxonomy $INSTALL_DIR/taxonomy</action> --> <!-- With prefix arg "$INSTALL_DIR" installs code into: $INSTALL_DIR/bin/ --> <action type="shell_command">cd $INSTALL_DIR && perl install.pl --prefix $INSTALL_DIR</action>