# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1351618486 18000
# Node ID c74f1ea02e29aca79c2775c81225c1303e2e6a34
# Parent  f9fc927e56c33015126ff02fb172703a3677e5e5
xml escapes in tool_dependencies.xml

diff -r f9fc927e56c3 -r c74f1ea02e29 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Oct 30 12:25:52 2012 -0500
+++ b/tool_dependencies.xml	Tue Oct 30 12:34:46 2012 -0500
@@ -11,7 +11,7 @@
                 <!-- Downloaded NCBI taxonomy will be over 1.8GB after processing,  Instead of $INSTALL_DIR/  maybe should be in a galaxy data dir -->
                 <!--  The KronaTools tar includes an empty taxonomy dir
                 <action type="make_directory">$INSTALL_DIR/taxonomy</action>
-                <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl --prefix $INSTALL_DIR --taxonomy $INSTALL_DIR/taxonomy</action>
+                <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl \-\-prefix $INSTALL_DIR \-\-taxonomy $INSTALL_DIR/taxonomy</action>
                 -->
                 <!-- With prefix arg "$INSTALL_DIR" installs code into: $INSTALL_DIR/bin/ -->
                 <action type="shell_command">cd $INSTALL_DIR &amp;&amp; perl install.pl --prefix $INSTALL_DIR</action>