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changeset 3:3398919bc103 draft

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Comment tool_dependencies.xml
author Jim Johnson <jj@umn.edu>
date Mon, 29 Oct 2012 16:05:59 -0500
parents 5f0f9a9b59e3
children 10132903b38b
files tool_dependencies.xml
diffstat 1 files changed, 4 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Mon Oct 29 14:10:07 2012 -0500
+++ b/tool_dependencies.xml	Mon Oct 29 16:05:59 2012 -0500
@@ -4,11 +4,13 @@
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://sourceforge.net/projects/krona/files/KronaTools%20%28Mac%2C%20Linux%29/KronaTools-2.2.tar</action>
-                <!-- Instaead of $INSTALL_DIR/  this could be in a data dir -->
+                <!-- Downloaded NCBI taxonomy will be over 1.8GB after processing,  Instead of $INSTALL_DIR/  maybe should be in a galaxy data dir -->
                 <action type="make_directory">$INSTALL_DIR/taxonomy</action>
+                <!-- With prefix arg "$INSTALL_DIR" installs code into: $INSTALL_DIR/bin/ -->
                 <action type="shell_command">perl install.pl --prefix $INSTALL_DIR --taxonomy $INSTALL_DIR/taxonomy</action>
+                <!-- Down load and process NCBI Taxonomy data -->
                 <action type="shell_command">./updateTaxonomy.sh</action>
-                <!-- copy javascript to galaxy/static/krona/ dir 
+                <!-- copy javascript to galaxy/static/krona/ 
                 <action type="shell_command">./deployResources.sh /static/krona</action>
                 -->
                 <action type="set_environment">