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annotate tool-data/gmap_indices.loc.sample @ 0:10e3476429b5 draft

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author jjohnson
date Fri, 05 Oct 2012 13:51:49 -0400
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jjohnson
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1 #This is a sample file distributed with Galaxy that enables tools
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jjohnson
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2 #to use a directory of GMAPDB indexed sequences data files. You will need
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3 #to create these data files using gmap_build and then create a gmap_indices.loc file
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jjohnson
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4 #similar to this one (store it in this directory) that points to
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5 #the directories in which those files are stored. The gmap_indices.loc
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6 #file has this format (white space characters are TAB characters):
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7 #
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8 #<unique_build_id> <dbkey> <display_name> <kmers> <map,map> <snp,snp> <file_base_path>
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jjohnson
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9 #hg18 hg18 hg18 (cmet atoi) 12,13,14,15 splicesites,introns snps /depot/data2/galaxy/gmap/hg18
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jjohnson
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10 #hg19 hg19 hg19 (cmet atoi) 12,13,14,15 splicesites,introns,snps snps,dbsnp /depot/data2/galaxy/gmap/hg19