Mercurial > repos > jjohnson > gatk2

changeset 34:b99c25b0ad4d draft

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Update tool version to 0.0.7
author Jim Johnson <jj@umn.edu>
date Thu, 28 Feb 2013 15:41:24 -0600
parents 76f8ca47b810
children a29c7d7d962d
files base_recalibrator.xml depth_of_coverage.xml haplotype_caller.xml indel_realigner.xml print_reads.xml realigner_target_creator.xml reduce_reads.xml unified_genotyper.xml variant_annotator.xml variant_apply_recalibration.xml variant_combine.xml variant_eval.xml variant_filtration.xml variant_recalibrator.xml variant_select.xml variants_validate.xml
diffstat 16 files changed, 16 insertions(+), 16 deletions(-) [+]
line wrap: on
line diff
--- a/base_recalibrator.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/base_recalibrator.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_base_recalibrator" name="Base Recalibrator" version="0.0.5">
+<tool id="gatk2_base_recalibrator" name="Base Recalibrator" version="0.0.7">
   <description>on BAM files</description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/depth_of_coverage.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/depth_of_coverage.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_depth_of_coverage" name="Depth of Coverage" version="0.0.5">
+<tool id="gatk2_depth_of_coverage" name="Depth of Coverage" version="0.0.7">
   <description>on BAM files</description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/haplotype_caller.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/haplotype_caller.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_haplotype_caller" name="Haplotype Caller" version="0.0.5">
+<tool id="gatk2_haplotype_caller" name="Haplotype Caller" version="0.0.7">
   <description>Call SNPs and indels simultaneously via local de-novo assembly of haplotypes in an active region</description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/indel_realigner.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/indel_realigner.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_indel_realigner" name="Indel Realigner" version="0.0.5">
+<tool id="gatk2_indel_realigner" name="Indel Realigner" version="0.0.7">
   <description>- perform local realignment</description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/print_reads.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/print_reads.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_print_reads" name="Print Reads" version="0.0.5">
+<tool id="gatk2_print_reads" name="Print Reads" version="0.0.7">
   <description>on BAM files</description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/realigner_target_creator.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/realigner_target_creator.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_realigner_target_creator" name="Realigner Target Creator" version="0.0.5">
+<tool id="gatk2_realigner_target_creator" name="Realigner Target Creator" version="0.0.7">
   <description>for use in local realignment</description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/reduce_reads.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/reduce_reads.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_reduce_reads" name="Reduce Reads" version="0.0.5">
+<tool id="gatk2_reduce_reads" name="Reduce Reads" version="0.0.7">
   <description>in BAM files</description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/unified_genotyper.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/unified_genotyper.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_unified_genotyper" name="Unified Genotyper" version="0.0.5">
+<tool id="gatk2_unified_genotyper" name="Unified Genotyper" version="0.0.7">
   <description>SNP and indel caller</description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/variant_annotator.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/variant_annotator.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_annotator" name="Variant Annotator" version="0.0.5">
+<tool id="gatk2_variant_annotator" name="Variant Annotator" version="0.0.7">
   <description></description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/variant_apply_recalibration.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/variant_apply_recalibration.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_apply_recalibration" name="Apply Variant Recalibration" version="0.0.5">
+<tool id="gatk2_variant_apply_recalibration" name="Apply Variant Recalibration" version="0.0.7">
   <description></description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/variant_combine.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/variant_combine.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_combine" name="Combine Variants" version="0.0.5">
+<tool id="gatk2_variant_combine" name="Combine Variants" version="0.0.7">
   <description></description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/variant_eval.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/variant_eval.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_eval" name="Eval Variants" version="0.0.5">
+<tool id="gatk2_variant_eval" name="Eval Variants" version="0.0.7">
   <description></description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/variant_filtration.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/variant_filtration.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_filtration" name="Variant Filtration" version="0.0.5">
+<tool id="gatk2_variant_filtration" name="Variant Filtration" version="0.0.7">
   <description>on VCF files</description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/variant_recalibrator.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/variant_recalibrator.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_recalibrator" name="Variant Recalibrator" version="0.0.5">
+<tool id="gatk2_variant_recalibrator" name="Variant Recalibrator" version="0.0.7">
   <description></description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/variant_select.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/variant_select.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_variant_select" name="Select Variants" version="0.0.5">
+<tool id="gatk2_variant_select" name="Select Variants" version="0.0.7">
   <description>from VCF files</description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>
--- a/variants_validate.xml	Thu Feb 28 15:32:04 2013 -0600
+++ b/variants_validate.xml	Thu Feb 28 15:41:24 2013 -0600
@@ -1,4 +1,4 @@
-<tool id="gatk2_validate_variants" name="Validate Variants" version="0.0.5">
+<tool id="gatk2_validate_variants" name="Validate Variants" version="0.0.7">
   <description></description>
   <requirements>
       <requirement type="package" version="2.3">gatk</requirement>