Mercurial > repos > jjohnson > gatk2
changeset 3:0edf813146d8 draft
tool_dependencies.xml - fix move_file and add symlink
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Thu, 01 Nov 2012 14:19:38 -0500 (2012-11-01) |
parents | a65944bad5c1 |
children | 5b2009fcf2ad |
files | tool_dependencies.xml |
diffstat | 1 files changed, 5 insertions(+), 1 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Nov 01 14:00:40 2012 -0500 +++ b/tool_dependencies.xml Thu Nov 01 14:19:38 2012 -0500 @@ -12,7 +12,11 @@ <source>GenomeAnalysisTKLite-2.2-2-gd3f5a5e/GenomeAnalysisTKLite.jar</source> <destination>$INSTALL_DIR</destination> </action> - <action type="shell_command">ln -s $INSTALL_DIR/GenomeAnalysisTKLite.jar GenomeAnalysisTK.jar</action> + <action type="shell_command">ln -s GenomeAnalysisTKLite.jar GenomeAnalysisTK.jar</action> + <action type="move_file"> + <source>GenomeAnalysisTK.jar</source> + <destination>$INSTALL_DIR</destination> + </action> <action type="set_environment"> <environment_variable name="GATK2_PATH" action="set_to">$INSTALL_DIR</environment_variable> </action>