# HG changeset patch
# User Jim Johnson <jj@umn.edu>
# Date 1351797578 18000
# Node ID 0edf813146d822733c45f2083169723e783784f3
# Parent  a65944bad5c1767aca198b781bab5be740e3d37b
tool_dependencies.xml - fix move_file and add symlink

diff -r a65944bad5c1 -r 0edf813146d8 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Nov 01 14:00:40 2012 -0500
+++ b/tool_dependencies.xml	Thu Nov 01 14:19:38 2012 -0500
@@ -12,7 +12,11 @@
                     <source>GenomeAnalysisTKLite-2.2-2-gd3f5a5e/GenomeAnalysisTKLite.jar</source>
                     <destination>$INSTALL_DIR</destination>
                 </action>
-                <action type="shell_command">ln -s $INSTALL_DIR/GenomeAnalysisTKLite.jar GenomeAnalysisTK.jar</action>
+                <action type="shell_command">ln -s GenomeAnalysisTKLite.jar GenomeAnalysisTK.jar</action>
+                <action type="move_file">
+                    <source>GenomeAnalysisTK.jar</source>
+                    <destination>$INSTALL_DIR</destination>
+                </action>
                 <action type="set_environment">
                     <environment_variable name="GATK2_PATH" action="set_to">$INSTALL_DIR</environment_variable>
                 </action>