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changeset 5:0ed800373b59 draft

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Quote the tool_dependencies.xml GATK2_SITE_OPTIONS action text
author Jim Johnson <jj@umn.edu>
date Fri, 02 Nov 2012 13:47:22 -0500
parents 5b2009fcf2ad
children 6dd67e9fd0e0
files tool_dependencies.xml
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Thu Nov 01 14:30:06 2012 -0500
+++ b/tool_dependencies.xml	Fri Nov 02 13:47:22 2012 -0500
@@ -19,7 +19,7 @@
                 </action>
                 <action type="set_environment">
                     <environment_variable name="GATK2_PATH" action="set_to">$INSTALL_DIR</environment_variable>
-                    <environment_variable name="GATK2_SITE_OPTIONS" action="set_to">--num_threads 4 --num_cpu_threads_per_data_thread 3 --phone_home STANDARD</environment_variable>
+                    <environment_variable name="GATK2_SITE_OPTIONS" action="set_to">"--num_threads 4 --num_cpu_threads_per_data_thread 3 --phone_home STANDARD"</environment_variable>
                 </action>
             </actions>
         </install>