Mercurial > repos > jjohnson > gatk2

annotate tool_dependencies.xml @ 28:6ef8eb568700 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values
author Jim Johnson <jj@umn.edu>
date Mon, 18 Feb 2013 15:48:46 -0600
parents b23ecdd665d0
children c511aa6f93da
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
1 <?xml version="1.0"?>
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
2 <tool_dependency>
18
7533db8dfb5b Update tool_dependencies to GATK v 2.3
Jim Johnson <jj@umn.edu>
parents: 15
diff changeset
3 <package name="gatk" version="2.3">
28
6ef8eb568700 Move GATK tool_dependency to a repository dependency, use 2 env vars: GATK2_NUM_THREADS and GATK2_NUM_CPU_THREADS for site threading values
Jim Johnson <jj@umn.edu>
parents: 27
diff changeset
4 <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="gatk_lite_2_3_9" owner="jjohnson" changeset_revision="10c2fe2d3b39" />
0
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
5 </package>
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
6 <package name="samtools" version="0.1.18">
27
b23ecdd665d0 Use repository dependency for samtools with corrected revision
Jim Johnson <jj@umn.edu>
parents: 26
diff changeset
7 <repository toolshed="http://testtoolshed.g2.bx.psu.edu" name="package_samtools_0_1_18" owner="devteam" changeset_revision="5f7ec5048224" />
0
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
8 </package>
74c05070a3f8 Uploaded
jjohnson
parents:
diff changeset
9 </tool_dependency>