Mercurial > repos > jjohnson > ensembl_variant_report

annotate tool-data/twobit.loc.sample @ 1:a43d6ae3eb85 draft

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
author jjohnson
date Fri, 06 Jan 2017 16:26:21 -0500
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a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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1 #This is a sample file distributed with Galaxy that is used by some
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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2 #tools. The twobit.loc file has this format (white space characters
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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3 #are TAB characters):
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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4 #
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jjohnson
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5 #<Build> <FullPathToFile>
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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6 #
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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7 #So, for example, if you had droPer1 twobit files stored in
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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8 #/depot/data2/galaxy/droPer1/, then the twobit.loc entry
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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9 #would look like this:
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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10 #
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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11 #droPer1 /depot/data2/galaxy/droPer1/droPer1.2bit
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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12 #
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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13 #and your /depot/data2/galaxy/droPer1/ directory would
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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14 #contain all of your twobit files (e.g.):
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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15 #
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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16 #-rw-rw-r-- 1 nate galaxy 48972650 2007-05-04 11:27 droPer1.2bit
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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17 #...etc...
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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18 #
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jjohnson
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19 #Your twobit.loc file should include an entry per line for each twobit
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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20 #file you have stored. For example:
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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21 #
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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22 #droPer1 /depot/data2/galaxy/droPer1/droPer1.2bit
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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23 #apiMel2 /depot/data2/galaxy/apiMel2/apiMel2.2bit
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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24 #droAna1 /depot/data2/galaxy/droAna1/droAna1.2bit
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
jjohnson
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25 #droAna2 /depot/data2/galaxy/droAna2/droAna2.2bit
a43d6ae3eb85 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/ensembl_variant_report commit 239c1ee096e5fc3e2e929f7bf2d4afba5c677d4b-dirty
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26 #...etc...